PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G13070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 227aa    MW: 23162.7 Da    PI: 10.3703
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G13070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.93.5e-39119195177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cq+e C +dls+a +y+rrhkvC++hsk pvvlv+gl+qrfCqqCsrfhel  fD+ k+sCr+rLa+hnerrrk +
  LPERR07G13070.1 119 RCQAETCGVDLSDASRYYRRHKVCQHHSKEPVVLVAGLRQRFCQQCSRFHELAAFDDIKKSCRDRLAGHNERRRKGS 195
                      6*************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-32113181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.59117194IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-36118197IPR004333Transcription factor, SBP-box
PfamPF031101.1E-30120193IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDRKDKDHRK EKARKASVSS VAASMAALAA AAAAGDMLPR QEARPPSPME EDKNPRLMVG  60
SASLPPPPPA AAGGAASSPS SPVAGGSGGG GGGGAARRGA GGRAAGGGVA AGGGGGGPRC  120
QAETCGVDLS DASRYYRRHK VCQHHSKEPV VLVAGLRQRF CQQCSRFHEL AAFDDIKKSC  180
RDRLAGHNER RRKGSADANG SGGSGGNCRD TDHDGRSHPG NPPYHIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29111193284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107GGRAAGGG
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G13070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645415.13e-50squamosa promoter-binding-like protein 13
SwissprotQ6Z4613e-51SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A0D9WZ861e-158A0A0D9WZ86_9ORYZ; Uncharacterized protein
STRINGLPERR07G13070.11e-159(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.19e-32squamosa promoter binding protein-like 3