PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G13460.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 244aa MW: 26767 Da PI: 4.6202

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G13460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.4	1.1e-17	5	144	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka......eekewyfFskrdkkya.tgkrknratk..sgy 82 l pG+ F P+++ l+++yL++k++g++ l ++ ++++vd+y + P +L +k+++ + k wyfF++ k ++ + r++r++ + LPERR07G13460.1 5 LLPGLSFLPSESVLLDRYLQPKIAGSSlddLGCKAIMHDVDVYLLPPDELTAKYEHapagsdGAKVWYFFCPITKPKNgRTARRSRTICgdIRR 98 579**********************655555568**********8533333444446779*98775531344555543322346 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkge.ktdWvmheyr 127 W ++ +k+v++ ++ g + +++ +++++ g+ k W+m ey LPERR07G13460.1 99 WYHSEGSKKVVNGCAAVGGYYQKFTYKEKTESGGNvKPGWLMTEYG 144 9988888999998999999***977665554499*****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-25	3	162	IPR003441	NAC domain
PROSITE profile	PS51005	26.042	5	162	IPR003441	NAC domain
Pfam	PF02365	8.2E-12	7	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAPPLLPGLS FLPSESVLLD RYLQPKIAGS SLDDLGCKAI MHDVDVYLLP PDELTAKYEH 60 APAGSDGAKV WYFFCPITKP KNGRTARRSR TICGDIRRWY HSEGSKKVVN GCAAVGGYYQ 120 KFTYKEKTES GGNVKPGWLM TEYGVTPEHG GVDLVLCKIY MSPRAPSRKR KAAEEEHVDA 180 PPPTVQRVLQ AIVEEEEETA SCGDAPTVVE AAEEQGDASG NGWDDIDMTE LFNGDTEDEP 240 VRSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G13460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9WZD8	0.0	A0A0D9WZD8_9ORYZ; Uncharacterized protein
STRING	LPERR07G13460.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6280	15	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	2e-08	NAC domain containing protein 64