PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G15240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 762aa    MW: 85289.2 Da    PI: 7.7302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G15240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.72.6e-08431481252
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaar 52 
                      ++lL++cAea+s++ +e+ ++l+++ +  +s +g+p+qRl ay++e+L ar
  LPERR07G15240.1 431 KQLLTRCAEALSEDRTEEFHKLVQEARGVVSINGEPIQRLGAYLLEGLVAR 481
                      689*********************************************988 PP
2GRAS339.56e-10448576197373
             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + + l  +g+ L+++ +e+++p+ef++l     ++
  LPERR07G15240.1 485 SANGAIAEALRSENNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGDGLDIVGNMLKSMSKEFNIPLEFTPL-NVYATQ 577
                      69****************************************************999999**************************6.777889 PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      ++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf e+++yysa+f+s++a+lpr+++er
  LPERR07G15240.1 578 VTKEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMDYYSAMFESIDANLPRDNKER 671
                      99******************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      i+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGF+p+pls+++++ +k ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  LPERR07G15240.1 672 ISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWKNRKLISASAW 761
                      ************************************************************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035149.2E-6431481IPR005202Transcription factor GRAS
PfamPF035142.1E-101485761IPR005202Transcription factor GRAS
PROSITE profilePS5098548.796485743IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MEATQAKYQT LSPLSPHPPL SASSWWAPPR TNLFISLPPH PCLIGRSRTP NRQREIRHQH  60
EPSDPDPTAN SGVQTPLQRQ RRDRVRTCPR ASLTRDREVH VTDARRRRIG IVRPSGVPTP  120
PSSVGRDAAA LTAAGDGRTY VAVTASVVTH GGEGILLQSP SGKRREEERR GLGSDIIIAH  180
TKRGGEGGER IRTREPAERE REKKKSWRER EVVELDWGIP AAVQIGGGHE QLISLLKYRL  240
TSANVVYEIP TENNLQNSPW QANPLKYEFS DSPYTPLSSQ FECDNLSALT NTPDNQSSTE  300
TISAQPISPL EADSSYRQAA ILLRENIQVG ADPLYATSRH NMQHALREIE TVLMAPDTDD  360
ATTSTKHEFE ELKPAQLVRQ RSRTWSHESR QPLPGVGRPQ FASGGYPTAS YEFRPEKRQR  420
ELREDPQIIV KQLLTRCAEA LSEDRTEEFH KLVQEARGVV SINGEPIQRL GAYLLEGLVA  480
RHGNSANGAI AEALRSENNI HIIDFQIAQG TQWITLIQAL AARPGGPPHV RITGIDDPVS  540
EYARGDGLDI VGNMLKSMSK EFNIPLEFTP LNVYATQVTK EMLEIRPGEA LAVNFTLQLH  600
HTPDESVDVN NPRDGLLRMV KGLSPKVTTL VEQESHTNTT PFLMRFGETM DYYSAMFESI  660
DANLPRDNKE RISVEQHCLA KDIVNIIACE GKDRVERHEL LGKWKSRLTM AGFRPYPLSS  720
YVNSVIKKLL ACYSDKYTLE EKDGAMLLGW KNRKLISASA WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-544147613378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883RQRRDR
296107REVHVTDARRRR
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G15240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038380.0AP003838.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1582_D10.
GenBankAP0042350.0AP004235.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0006G05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAY0622090.0AY062209.1 Oryza sativa chitin-inducible gibberellin-responsive protein (CIGR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646796.10.0chitin-inducible gibberellin-responsive protein 1 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0D9X0060.0A0A0D9X006_9ORYZ; Uncharacterized protein
STRINGLPERR07G15240.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-154GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]