PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G16110.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 785aa    MW: 87361.8 Da    PI: 8.2324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G16110.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.2e-19287386198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  LPERR07G16110.2 287 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 378
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  LPERR07G16110.2 379 KLVMGFRK 386
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-29283388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19284386IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-22285386No hitNo description
SMARTSM010195.7E-21287387IPR003340B3 DNA binding domain
PfamPF023626.3E-16287386IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251287388IPR003340B3 DNA binding domain
PROSITE profilePS5105014.391542592IPR011124Zinc finger, CW-type
PfamPF074962.2E-11547589IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MCARKSHNAM APNHIWSSSM HMAQNVADRK DNFVKTWRPP AGQFSSQWRQ NNMWSMSTMQ  60
SDLQQRLAYE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDK PTTPAGMNHI IRDRYANGHT  120
QHSSLDPTYA YTLYHREGPN QSLHDHSHQH HGENDHLSAR KGVTPDPCSS VSTTFKLDSH  180
HPSILKDDSS ALPAGLPSNF SSANGPKDHI RIGPTQQQQQ MASSSLQKQF YSHSVIDNDF  240
QAQLRNGRPR MDAKARSQLL PRYWPRITDQ ELQHLSGDSN SVITPLFEKM LSASDAGRIG  300
RLVLPKKCAE AYFPAISQAE GLPLKVQDAT GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS  360
MQLQAGDTVT FSRIDPEGKL VMGFRKATNL SAEQDQPTKP ANVVPPPPEA NSKVSAADSG  420
PSAAVPRPIK VNTEIKISSP VEQATASKID KGALAQKEGP GTSSSSPGPV KRKATSVGPK  480
IKRFRMDNEE SMELKITWEE AQELLRPPPK APSIVIVDGH EFEEYEEPPI LGRRTYFVTD  540
QSGENHQWAQ CEDCSKWRKL PVDALLPSKW TCADNKWDPE RSSCDSAQEI NTEELTEMIP  600
IKPGAAKKSK GTDNIDVSDG LDTLANLAIL GEGESLPSQP TTRHPRHRPG CSCIVCIQPP  660
SGKGPKHKQT CTCNVCMTVR RRFRTLMMRR EKRQQSEKDV GASRRKEVGQ SSEPVPQAGS  720
DAPPTNTTSS PPKTDTNSEG PDDMAVDNKR TSSPIKNQID LNSQPEREDE HSPKSDATRL  780
RDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C3e-652653891125B3 domain-containing transcription repressor VAL1
5yzz_C3e-652653891125B3 domain-containing transcription repressor VAL1
5z00_C3e-652653891125B3 domain-containing transcription repressor VAL1
5z00_G3e-652653891125B3 domain-containing transcription repressor VAL1
5z00_K3e-652653891125B3 domain-containing transcription repressor VAL1
5z00_M3e-652653891125B3 domain-containing transcription repressor VAL1
6j9a_A4e-652653892126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G16110.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0D9X0C40.0A0A0D9X0C4_9ORYZ; Uncharacterized protein
STRINGLPERR07G16110.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-145HSI2-like 1