PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 619aa    MW: 66114.4 Da    PI: 5.2952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-056284123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F r  nL+ H r H
  LPERR07G17330.1 62 FVCEVCGKGFQRDQNLQLHRRGH 84
                     89*******************88 PP
2zf-C2H215.93.6e-05141162223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       Cp Cgk++  + +Lk H +t+
  LPERR07G17330.1 141 ACPRCGKRYAVQADLKAHAKTC 162
                      6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-86184No hitNo description
PROSITE profilePS5015711.6356284IPR007087Zinc finger, C2H2
SMARTSM003550.0146284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-56284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355150105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-8135160No hitNo description
SMARTSM0035590140160IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663140168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MPPNPTGTEV PEAGPGPAAA AAEPAPAPEA PVKKKRNLPG TPDPDAEVIA LSPGTLLATN  60
RFVCEVCGKG FQRDQNLQLH RRGHNLPWRL RQRGPGAAPP RRRVYVCPEP NCVHHNPTRA  120
LGDLTGIKKH FCRKHGEKRW ACPRCGKRYA VQADLKAHAK TCGTREYRCD CGTLFTRRDS  180
FVTHRAFCGA LVEETGRVLA VPAPPSPRPP DLEAEENVDK DNDKEEGEKE EEENGDSPVA  240
EVDEQQPSQV VAEGMPQRCP PSLPLPPPIL QEQQPLVVAV VPNVDEQVVV AQPVLIAKQE  300
IEDERDEDVC FQEADRFKDA ELEDSNLLDN DTPMLPCFLP SPSEAIGTDG SSTSCGTGSS  360
VTNSIAPTTT TSTFAGLFAS VTTSSTPQSR SLRDLIGVDP TFLCLAIGAP SSLFLQTNAS  420
DPCSFAPPPA PHMSATALLQ KAAEVGASQS SSSFLKEFGL AASTSSTPPS KLSQGRFTSN  480
TPASQLPQGR FMDTAPAPPS KLPHRMFTDN RVQQWHHRSN QQMEMEPGPM LSGGLGLGLT  540
YDSGNSGLPD LMMGPSTLYG PKPATLDFLG LGIGGTMAGS TANGGLQALM VGRELDMGSA  600
QAPVPWEEAQ RKTNGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-30136198365Zinc finger protein JACKDAW
5b3h_F6e-30136198365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647948.10.0protein indeterminate-domain 1
TrEMBLA0A0D9X0T30.0A0A0D9X0T3_9ORYZ; Uncharacterized protein
STRINGLPERR07G17330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-94C2H2 family protein