PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17740.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 604aa    MW: 64605.1 Da    PI: 5.7366
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.61.4e-941906032374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lLlecA+ v+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl++s++++ ++l++ +++++ s +++  + l f+e+sP+  f+
  LPERR07G17740.1 190 SQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTSSGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFG 282
                      589************************************************************99888744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege..............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakf 168
                      h++aN aIle++ ++              +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kf
  LPERR07G17740.1 283 HVAANGAILESFLEAssaaaasssdsataQRFHILDLSNTFCTQWPTLLEALATRSaDETPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKF 376
                      **********9966656666777777777889************************8889**********988889999999************ PP

             GRAS 169 Aeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....... 251
                      A+ +gvpf+f++++++ +l++l+l++L+++      alaVn+v +l  +   +++ +  rd++   +++l P+vv+vve+ead+ ++       
  LPERR07G17740.1 377 ARLMGVPFRFRAVHHSgDLAELDLDALDLRDggaTTALAVNCVNSLRGVA--PGKARR-RDAFAASLRRLDPRVVTVVEEEADLVAAssdadap 467
                      *************8888**************888889************8..666666.9*********************9994444799*** PP

             GRAS 252 ........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                               Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et++ W +r+++aGF+pv++se++a+++
  LPERR07G17740.1 468 seeadtdaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAAAWARRMRSAGFSPVAFSEDVADDV 560
                      *********************************************.************************************************ PP

             GRAS 338 klllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      ++llr++  +g+++ +         + ++l Wk++pLv++SaWr
  LPERR07G17740.1 561 RSLLRRYR-EGWSMRDAstddsaaGAGVFLAWKEQPLVWASAWR 603
                      *******9.77777733334555345566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.665163577IPR005202Transcription factor GRAS
PfamPF035144.8E-92190603IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDTLFRLVSL QAASEQQQQQ QSASYNSRST TSSGSRSSSH QTNASYSYYH NHSSNSGGGY  60
YYGGGAPPPP PQHYYYLEQP YQEDQCGNAH QLYMDEDFSS SSSSRQHQQH FHHGAPPPVS  120
SAPTPPLSTS STAAGAGGGH GLFEAADLSF PPDLNLDFSS PASSSGGGGG GGGTASSGAV  180
GGGGGGRWAS QLLLECARSV AARDSQRVQQ LMWMLNELAS PYGDVEQKLA SYFLQGLFAR  240
LTSSGPRTLR TLAAASDRNT SFDSTRRTAL RFQELSPWSS FGHVAANGAI LESFLEASSA  300
AAASSSDSAT AQRFHILDLS NTFCTQWPTL LEALATRSAD ETPHLSITTV VSAAPSAPTA  360
AVQRVMREIG QRMEKFARLM GVPFRFRAVH HSGDLAELDL DALDLRDGGA TTALAVNCVN  420
SLRGVAPGKA RRRDAFAASL RRLDPRVVTV VEEEADLVAA SSDADAPSEE ADTDAAFLKV  480
FGEGLRFFSA YMDSLEESFP KTSNERLALE RGAGRAIVDL VSCPASESME RRETAAAWAR  540
RMRSAGFSPV AFSEDVADDV RSLLRRYREG WSMRDASTDD SAAGAGVFLA WKEQPLVWAS  600
AWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-15818460482474Protein SHORT-ROOT
5b3h_B1e-15818560429420Protein SHORT-ROOT
5b3h_E1e-15818560429420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0054370.0AP005437.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1113_E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176974.10.0protein SHORT-ROOT 1
SwissprotA2YN560.0SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLA0A0D9X0Y70.0A0A0D9X0Y7_9ORYZ; Uncharacterized protein
STRINGLPERR07G17740.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-119GRAS family protein