PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17870.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 190aa    MW: 20350.4 Da    PI: 9.6452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011106128123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C ++Fs+   L  H r H
  LPERR07G17870.1 106 HSCSICFRTFSSGQALGGHVRAH 128
                      79************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7026991IPR007087Zinc finger, C2H2
SuperFamilySSF576674.59E-769128No hitNo description
SMARTSM003550.0756991IPR015880Zinc finger, C2H2-like
PfamPF139126.3E-86993IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
PfamPF139123.2E-8105130IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162106128IPR007087Zinc finger, C2H2
SMARTSM003550.57106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDPWVYGGSP SKHSDISGSF NVDSMYLASC LMMLANGVRG EARDVSRSGG VKSVDASIVA  60
TVKPNQQGYR CSVCGKVYMC YQSLGGHMTI HRKMLSSCRS KPAKVHSCSI CFRTFSSGQA  120
LGGHVRAHYE GGVVGEVVKK KNVVKTKTTE APKPMPKDFD LNLPPATTTM GDEAESSAPE  180
AKRARMLSPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658754.13e-59PREDICTED: zinc finger protein ZAT6-like
RefseqXP_015647208.15e-59zinc finger protein AZF3
TrEMBLA0A0D9X1041e-139A0A0D9X104_9ORYZ; Uncharacterized protein
STRINGLPERR07G17870.11e-140(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-21C2H2 family protein