PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G17890.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 63aa MW: 6757.88 Da PI: 8.5162

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G17890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.5	5.8e-16	2	60	1	54
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer 54 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r LPERR07G17890.1 2 SCNGCRVLRKGCSEGCVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQR 60 6*******************9999888899*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.8	1	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-13	2	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIEGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR 60 AGN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G17890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005149	6e-87	AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBank	AP014963	6e-87	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	6e-87	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647207.1	3e-37	LOB domain-containing protein 37
Swissprot	Q9FN11	6e-33	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SZE8	5e-33	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0D9X106	1e-38	A0A0D9X106_9ORYZ; Uncharacterized protein
STRING	LPERR07G17890.1	2e-39	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-35	LOB domain-containing protein 39

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]