PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G17900.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 139aa MW: 13888.5 Da PI: 5.845

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G17900.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	22.6	2.9e-07	1	36	62	97
DUF260 62 vyeAearardPvyGavgvilklqqqleqlkaelall 97 +yeA r+ +Pv Gavg++++++++l+q+++e++l+ LPERR07G17900.1 1 MYEAAGRTINPVGGAVGLLSSGSWHLCQAAVETVLR 36 6*****************************998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MYEAAGRTIN PVGGAVGLLS SGSWHLCQAA VETVLRGGGI GPMTDQLDAA SLAARRGVGC 60 STFSTAKRSA TRNTDAAAAR VGQPSCDLGL WLSPGSPPAV AAGERRAGTP SMNSEGSVTT 120 CGGAGGGERE EPELLNLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G17900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069813	1e-40	AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.
GenBank	AP005149	1e-40	AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBank	AP014963	1e-40	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	1e-40	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647207.1	5e-55	LOB domain-containing protein 37
TrEMBL	A0A0D9X107	1e-93	A0A0D9X107_9ORYZ; Uncharacterized protein
STRING	LPERR07G17900.1	2e-94	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-12	LOB domain-containing protein 39