PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 477aa    MW: 51400.5 Da    PI: 5.1443
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.42e-88654742373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.......fsevs 88 
                      ++lL++cA+a++++d++l+q++L+ l+++a  dgd++qRl+a f+ AL +r +r  ++ +ka+ + + ++  +s +l+++++       f +++
  LPERR07G17920.1  65 EQLLVHCANAIEANDATLTQQILWVLNNIAPADGDSNQRLTAAFLCALVSRASR--TGACKAVLTAAVADAVESAALHVHRFtavelagFIDLT 156
                      79****************************************************..667777766666655555555555444455599***** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfe 177
                      P+++f++ +aN aI+eaveg   vH++D++ ++++Q p+L++ La+R+egpp lR+T+ +  e++        ++ e+g +L +fA++ +++++
  LPERR07G17920.1 157 PWHRFGYTAANAAIVEAVEGYPVVHVVDLGTTHCMQIPTLIDMLAARAEGPPILRLTVADVVEPTappplLDMSYDELGAKLVSFARSRNMSMD 250
                      *********************************************************988877777788888899******************* PP

             GRAS 178 fnvl.......vakrledleleeLrvkp...........gEalaVnlvlqlhrll............desvsleserdevLklvkslsPkvvvv 241
                      f+v+       +++ +++l++++L  ++           gEal+Vn+++ lh+++            +++++  s r+ +Lk ++ l P++vvv
  LPERR07G17920.1 251 FRVVptspadaLSSLVDNLRVQQLVSSSssssdvigicgGEALVVNCHMLLHTVPdetagsvnlmtpQQQQQPISLRTMLLKSLRALDPTLVVV 344
                      ****98877766667788888888444466778899999****************99999999998855555555699**************** PP

             GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                      v+++ad ++ + + r+  a+++ +  +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er+e  ++W +r++ aGF+p++++e+aa 
  LPERR07G17920.1 345 VDEDADFTACDVVGRLRAAFNFLWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLATEGVERVERQEDRARWGQRMRGAGFRPAAFGEEAAG 437
                      ***********************************************.********************************************** PP

             GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +++++l++++  g+ ++ e++ lvl+Wk++++v++SaW
  LPERR07G17920.1 438 EVRAMLNEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 474
                      **********.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.29138456IPR005202Transcription factor GRAS
PfamPF035147.0E-8665474IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MQFTHTAPPP PPLHPNGHGS LGLGLYLDVG ATRGGGRPWF GGSYPPPPPS SKISLGNLNS  60
TSCMEQLLVH CANAIEANDA TLTQQILWVL NNIAPADGDS NQRLTAAFLC ALVSRASRTG  120
ACKAVLTAAV ADAVESAALH VHRFTAVELA GFIDLTPWHR FGYTAANAAI VEAVEGYPVV  180
HVVDLGTTHC MQIPTLIDML AARAEGPPIL RLTVADVVEP TAPPPLLDMS YDELGAKLVS  240
FARSRNMSMD FRVVPTSPAD ALSSLVDNLR VQQLVSSSSS SSDVIGICGG EALVVNCHML  300
LHTVPDETAG SVNLMTPQQQ QQPISLRTML LKSLRALDPT LVVVVDEDAD FTACDVVGRL  360
RAAFNFLWIP YDAVDTFLPK GSEQRRWYEA EVGWKVENVL ATEGVERVER QEDRARWGQR  420
MRGAGFRPAA FGEEAAGEVR AMLNEHAAGW GMKREDDDLV LTWKGHNVVF ASAWAPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-474347770475Protein SHORT-ROOT
5b3h_B4e-474347716421Protein SHORT-ROOT
5b3h_E4e-474347716421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037500.0AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.10.0scarecrow-like protein 32
SwissprotQ9SN221e-154SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0D9X1090.0A0A0D9X109_9ORYZ; Uncharacterized protein
STRINGLPERR07G17920.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-155GRAS family protein