PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G18740.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NF-YB

Protein Properties

Length: 162aa MW: 16846.8 Da PI: 4.8334

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G18740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	185.8	3.4e-58	17	112	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedy+eplk+yl+k+releg LPERR07G18740.1 17 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEPLKLYLHKFRELEG 110 89*******************************************************************************************9 PP NF-YB 96 ek 97 ek LPERR07G18740.1 111 EK 112 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-54	15	125	IPR009072	Histone-fold
SuperFamily	SSF47113	3.11E-41	19	128	IPR009072	Histone-fold
Pfam	PF00808	3.7E-28	22	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.5E-21	50	68	No hit	No description
PROSITE pattern	PS00685	0	53	69	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	6.5E-21	69	87	No hit	No description
PRINTS	PR00615	6.5E-21	88	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MPDSDNESGG GELGSAREQD RFLPIANVSR IMKKALPANA KISKDAKETV QECVSEFISF 60 ITGEASDKCQ REKRKTINGD DLLWAMTTLG FEDYIEPLKL YLHKFRELEG EKVAGAASSG 120 SQDASRNNGG GGGGGGGGGG GGGYGMYGGG GGGMIMMMGQ PI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-51	15	107	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G18740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288037	1e-123	AB288037.1 Oryza sativa Japonica Group OsHAP3F gene for HAP3 subunit of HAP complex, complete cds.
GenBank	AK111621	1e-123	AK111621.1 Oryza sativa Japonica Group cDNA clone:J013109P12, full insert sequence.
GenBank	AK112118	1e-123	AK112118.1 Oryza sativa Japonica Group cDNA clone:002-139-C11, full insert sequence.
GenBank	AP005193	1e-123	AP005193.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0493C06.
GenBank	AP006458	1e-123	AP006458.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06.
GenBank	AP014963	1e-123	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175350.1	3e-80	nuclear transcription factor Y subunit B-8-like
Swissprot	Q69J40	9e-76	NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBL	A0A0D9X1A8	1e-112	A0A0D9X1A8_9ORYZ; Uncharacterized protein
STRING	LPERR07G18740.1	1e-113	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-71	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]