PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G19250.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 84aa    MW: 8835.03 Da    PI: 7.0256
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G19250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.35.9e-154983133
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33
                     C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk 
  LPERR07G19250.1 49 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKG 83
                     6668877778***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.66E-104582No hitNo description
SMARTSM004010.00824584IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-114882IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.2E-134983IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MMHMLVAPDG GGGEIHPYGA AAAPAPAMEQ ELELHRDNAD DGLDGHVRCL RCGISGNATP  60
HMRRGPDGPR TLCNACGIAY RKGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G19250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663171e-88AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence.
GenBankAK0738031e-88AK073803.1 Oryza sativa Japonica Group cDNA clone:J033068D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958302.16e-48protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0D9X1H05e-54A0A0D9X1H0_9ORYZ; Uncharacterized protein
STRINGLPERR07G19250.18e-55(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.25e-13GATA-type zinc finger protein with TIFY domain