PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G19320.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 320aa    MW: 35299.7 Da    PI: 4.3869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G19320.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18104154155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa a++  +++++g
  LPERR07G19320.2 104 THYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFATAEEAAMAYDVEARRIRG 154
                      68********.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.15E-30104164No hitNo description
PfamPF008472.2E-11104154IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22105163IPR016177DNA-binding domain
SMARTSM003809.3E-37105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31105163IPR001471AP2/ERF domain
PROSITE profilePS5103223.433105162IPR001471AP2/ERF domain
PRINTSPR003673.0E-11106117IPR001471AP2/ERF domain
PRINTSPR003673.0E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MCGGSIIGDL YSPVRRTVHA GDLWADTGKG KNGGDILKRK GSSWDFDVDV DDDDFEADFE  60
EFEDDYDDDD DDVVDFGHDD QESDMNSLKL AGLSSTKLSR KRKTHYRGIR QRPWGKWAAE  120
IRDPSKGVRV WLGTFATAEE AAMAYDVEAR RIRGKKAKVN FPTAAAAASK RPRRSPAAAT  180
EKPHKKKSQS SNRASSAGSS TGDDAAAVAA IDDGSVKLEL LSEMMTDSWL DAFELNDLER  240
LRETSNGGFG DQIQKVEAAV VADEFVYFDS YPSYVQMGYL DQGNSYENID ALFSGEAVLD  300
GVNIGGLWSF DDMPIEFRSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22105162563ATERF1
3gcc_A1e-22105162563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103SRKRKT
2100104KRKTH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G19320.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610471e-129AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBankAK0670601e-129AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBankAK1093601e-129AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657959.11e-116PREDICTED: ethylene-responsive transcription factor ERF073-like
RefseqXP_015694870.11e-116PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBLA0A0D9X1I70.0A0A0D9X1I7_9ORYZ; Uncharacterized protein
STRINGLPERR07G19320.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-30ethylene-responsive element binding protein