PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G19680.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 1108aa    MW: 124056 Da    PI: 6.8542
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G19680.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.32.4e-56952112118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  LPERR07G19680.2  95 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 188
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  LPERR07G19680.2 189 RRTYWLLEEGFMNIVLVHYLEVK 211
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9190216IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7693211IPR005559CG-1 DNA-binding domain
PfamPF038593.7E-5096210IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.3E-5513600IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.4E-16514600IPR014756Immunoglobulin E-set
PfamPF018331.6E-4514587IPR002909IPT domain
CDDcd002046.39E-14696805No hitNo description
Gene3DG3DSA:1.25.40.202.2E-17698808IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-17699807IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.741713807IPR020683Ankyrin repeat-containing domain
PfamPF127964.2E-7719808IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.484746778IPR002110Ankyrin repeat
SMARTSM002480.091746775IPR002110Ankyrin repeat
SMARTSM00248460785814IPR002110Ankyrin repeat
SMARTSM000152.3918940IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718919948IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-7920969IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.006920939IPR000048IQ motif, EF-hand binding site
SMARTSM000150.011941963IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.377942966IPR000048IQ motif, EF-hand binding site
PfamPF006122.8E-4944963IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MQGHYRHSML LLSLLPFSPF VTLPHVTNIP IRRRRALKSL AARIKIPQIH RAAPRFRAAR  60
RRRRRQRRRL ADRWMAEVRK YGLPNQPPDI PQILLEAQNR WLRPTEICHI LSNYKKFSIA  120
PEPPNRPASG SLFLFDRKIL RYFRKDGHNW RKKKDGKTVK EAHEKLKVGS VDVLHCYYAH  180
GEENENFQRR TYWLLEEGFM NIVLVHYLEV KGGKQSFSRS KDAEESVGLS NADSPACSNS  240
FASQSQVASQ SMDAESPISG QISEYEDAET DNCRASSRYD PFVEMQQPVD GVMMDDMLGV  300
SAPSAGYRGE MQTTTANSNN HFATPYDIAG VFNEAGAGLR GASKTLHDSV RFGEPYPEYP  360
TDLMEPALYS SIATMESNNL DDNSRLETFM SEALYTNNLT QKEADALTTV GITPSQVENN  420
SYADGSIRYP LLKQTSLDLF KIEPDGLKKF DSFSRWMSSE LPEVADLDIK SSSDAFWSST  480
ETVSVADGTS IAMNEQLDAF VVSPSLSQDQ LFSIIDVSPS YACTGSRNKV LITGTFLANK  540
EHVENCKWSC MFGDVEVPAE VLAHGSLRCY TPVHLSGRVP FYVTCSNRVA CSEVREFEFR  600
DSGSRHMDAS DPHITGINEM HLHIRLEKLL SLGQDDYEKY VMSEGNEKSE IINTINSLML  660
DDKWSNQAVP TDEKEVSTAR DQNIEKLVKE KLYCWLIHKI HDEGKGPNVL GNEGQGVIHL  720
VAALGYDWAI RPIITAGVNV NFRDARGWTA LHWAASCGRE RTVGALIASG AESGLLTDPT  780
PQFPSGRTAA DLASENGHKG IAGFLAESAL TSHLRALTLR ESKDGNAKEI CGLGGTEEFA  840
GSSSAHLPCG DSQAESLKDS LSAVRKSTQA AARIFQAFRV ESFHRKKVVE YGDDDCGLSD  900
ERTLSLVSIR KPGQNDGPSH SAAVRIQNKF RGWKGRKEFM IIRQKIVKIQ AHVRGHQVRK  960
SFRKIIWSVG IVEKIILRWR RKRRGLRGFQ PVKQLEGPSQ IQQLEGPSQI QPAKEEEEVD  1020
EYDYLKDGRK QAEGRLQRAL ARVKSMTQYP EAREQYSRLA NCVTELQEPQ AMIQDDMQSD  1080
AAIADGGDFM AELDELCGDD DAPMPPIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15664RAARRRRRR
25966RRRRRRQR
35967RRRRRRQRR
46067RRRRRQRR
56368RRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G19680.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0D9X1N10.0A0A0D9X1N1_9ORYZ; Uncharacterized protein
STRINGLPERR07G19680.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein