PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G19680.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 1075aa    MW: 120382 Da    PI: 7.1361
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G19680.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.32.3e-56952112118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  LPERR07G19680.3  95 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 188
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  LPERR07G19680.3 189 RRTYWLLEEGFMNIVLVHYLEVK 211
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9190216IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7693211IPR005559CG-1 DNA-binding domain
PfamPF038593.6E-5096210IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.0E-5480567IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.1E-16481567IPR014756Immunoglobulin E-set
PfamPF018331.6E-4481554IPR002909IPT domain
CDDcd002046.13E-14663772No hitNo description
Gene3DG3DSA:1.25.40.202.1E-17665775IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.6E-17666774IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.741680774IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-7686775IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.484713745IPR002110Ankyrin repeat
SMARTSM002480.091713742IPR002110Ankyrin repeat
SMARTSM00248460752781IPR002110Ankyrin repeat
SMARTSM000152.3885907IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718886915IPR000048IQ motif, EF-hand binding site
PfamPF006120.0058887906IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-7887936IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.011908930IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.377909933IPR000048IQ motif, EF-hand binding site
PfamPF006122.7E-4911930IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MQGHYRHSML LLSLLPFSPF VTLPHVTNIP IRRRRALKSL AARIKIPQIH RAAPRFRAAR  60
RRRRRQRRRL ADRWMAEVRK YGLPNQPPDI PQILLEAQNR WLRPTEICHI LSNYKKFSIA  120
PEPPNRPASG SLFLFDRKIL RYFRKDGHNW RKKKDGKTVK EAHEKLKVGS VDVLHCYYAH  180
GEENENFQRR TYWLLEEGFM NIVLVHYLEV KGGKQSFSRS KDAEESVGLS NADSPACSNS  240
FASQSQVASQ SMDAESPISG QISEYEDAET GAGYRGEMQT TTANSNNHFA TPYDIAGVFN  300
EAGAGLRGAS KTLHDSVRFG EPYPEYPTDL MEPALYSSIA TMESNNLDDN SRLETFMSEA  360
LYTNNLTQKE ADALTTVGIT PSQVENNSYA DGSIRYPLLK QTSLDLFKIE PDGLKKFDSF  420
SRWMSSELPE VADLDIKSSS DAFWSSTETV SVADGTSIAM NEQLDAFVVS PSLSQDQLFS  480
IIDVSPSYAC TGSRNKVLIT GTFLANKEHV ENCKWSCMFG DVEVPAEVLA HGSLRCYTPV  540
HLSGRVPFYV TCSNRVACSE VREFEFRDSG SRHMDASDPH ITGINEMHLH IRLEKLLSLG  600
QDDYEKYVMS EGNEKSEIIN TINSLMLDDK WSNQAVPTDE KEVSTARDQN IEKLVKEKLY  660
CWLIHKIHDE GKGPNVLGNE GQGVIHLVAA LGYDWAIRPI ITAGVNVNFR DARGWTALHW  720
AASCGRERTV GALIASGAES GLLTDPTPQF PSGRTAADLA SENGHKGIAG FLAESALTSH  780
LRALTLRESK DGNAKEICGL GGTEEFAGSS SAHLPCGDSQ AESLKDSLSA VRKSTQAAAR  840
IFQAFRVESF HRKKVVEYGD DDCGLSDERT LSLVSIRKPG QNDGPSHSAA VRIQNKFRGW  900
KGRKEFMIIR QKIVKIQAHV RGHQVRKSFR KIIWSVGIVE KIILRWRRKR RGLRGFQPVK  960
QLEGPSQIQQ LEGPSQIQPA KEEEEVDEYD YLKDGRKQAE GRLQRALARV KSMTQYPEAR  1020
EQYSRLANCV TELQEPQAMI QDDMQSDAAI ADGGDFMAEL DELCGDDDAP MPPIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15664RAARRRRRR
25966RRRRRRQR
35967RRRRRRQRR
46067RRRRRQRR
56368RRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G19680.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0D9X1N20.0A0A0D9X1N2_9ORYZ; Uncharacterized protein
STRINGLPERR07G19680.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein