PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G21050.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 583aa MW: 61263.9 Da PI: 6.1078

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G21050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5.2e-15	125	185	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk ++ LPERR07G21050.1 125 EAKRRARLVRNRESAHQSRQRKKQYVEELEGKVKAMQATIADLTARISCVTAENAALKHQL 185 789****************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-13	123	187	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.438	125	188	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-13	125	185	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.63E-13	127	185	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-16	127	186	No hit	No description
CDD	cd14704	5.29E-22	128	179	No hit	No description
PROSITE pattern	PS00036	0	131	145	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MAEPDLLAPT FPNLHFPAAP GDDFPDFPAL GGDDAAAFAF EDFDLDDLDF DFDVDLLSPP 60 SPDAPPLPVT SSSSAAAAGS PEAGTSFTGD GGGSKHEESA ESSIGRNGGD GGSSCKDGGK 120 EGGDEAKRRA RLVRNRESAH QSRQRKKQYV EELEGKVKAM QATIADLTAR ISCVTAENAA 180 LKHQLSGAAG GGVPPVPPMP MYPAVYPLPP PWIHPAYAMR GSQVPLVPIP RLKTQQTAAA 240 AAEPPAKKPR KTKKVAGVSL LGFLFLMMVC GCFVPAVNRM YGGSVDVGEG VVFGGSHHGR 300 ILAVEGPQSS VSNGIDPTVP QNGSETLPAL LYLPRNGKHV KINGNLVIKS IVASEKASSC 360 SSNYGGKSSG NQGKGETSLA IPGYVAPLEA GEIMETKGIR NELIALAPGD GSIYREDDGM 420 LPQWFSEAMS GPMLNSGMCT EVFQFDLSAT TADANGIVPV YSESITNTSQ NITGNLPSGR 480 VQKVKNRRIL YSEAIPLQGS TSNDTDHFKA PPKNQSQSHA SRKPVSSVVV SVLADPRDAG 540 DRDGEGRIPS NSLSRIFVVV LIDSVKYVTY SCVLPFKSHS THL

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MAEPDLLAPT FPNLHFPAAP GDDFPDFPAL GGDDAAAFAF EDFDLDDLDF DFDVDLLSPP  60
SPDAPPLPVT SSSSAAAAGS PEAGTSFTGD GGGSKHEESA ESSIGRNGGD GGSSCKDGGK  120
EGGDEAKRRA RLVRNRESAH QSRQRKKQYV EELEGKVKAM QATIADLTAR ISCVTAENAA  180
LKHQLSGAAG GGVPPVPPMP MYPAVYPLPP PWIHPAYAMR GSQVPLVPIP RLKTQQTAAA  240
AAEPPAKKPR KTKKVAGVSL LGFLFLMMVC GCFVPAVNRM YGGSVDVGEG VVFGGSHHGR  300
ILAVEGPQSS VSNGIDPTVP QNGSETLPAL LYLPRNGKHV KINGNLVIKS IVASEKASSC  360
SSNYGGKSSG NQGKGETSLA IPGYVAPLEA GEIMETKGIR NELIALAPGD GSIYREDDGM  420
LPQWFSEAMS GPMLNSGMCT EVFQFDLSAT TADANGIVPV YSESITNTSQ NITGNLPSGR  480
VQKVKNRRIL YSEAIPLQGS TSNDTDHFKA PPKNQSQSHA SRKPVSSVVV SVLADPRDAG  540
DRDGEGRIPS NSLSRIFVVV LIDSVKYVTY SCVLPFKSHS THL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G21050.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647746.1	0.0	bZIP transcription factor 60
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A0D9X258	0.0	A0A0D9X258_9ORYZ; Uncharacterized protein
STRING	LPERR07G21050.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	4e-65	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]