PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G23230.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 377aa MW: 40369.1 Da PI: 6.6572

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G23230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	8.1e-10	172	219	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l LPERR07G23230.1 172 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 219 9****************************************9888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	168	232	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	170	233	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-10	172	223	No hit	No description
Pfam	PF00170	9.1E-9	172	217	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.7E-8	172	217	No hit	No description
CDD	cd14703	1.24E-22	173	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MAMPPPKPGG DHPSPGRSPN LNLPCPPLPP IVPSPSPAPP PPPHHRRARS EVAFRFPEDL 60 GLGGGSGGDG ASFDEIGSED DLLFSTFMDM DKIAGGGADR DSRAAETSSP PRPTKHRHSA 120 SFDGFAFSAG APGTATKQQD GGGGVGFAAD VMEAKKAMSS EQLAELAAID PKRAKRILAN 180 RQSAARSKER KARYITELER KVQTLQTEAT TLSAQLTLFQ RDTTGLSAEN AELKIRLQAM 240 EQQAQLRDAL NDALKQEVER LKIATGEMTK SNEAYNTGMQ QVPYSPSFFQ LSEQHAVQHH 300 AGIQQLTHQF QQSHPSVPIH QMLSHPNSLS DMMQQDSLGR LQGLDIGKGP VAVKSEAEVV 360 VKSEGSSISA GESNSTF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MAMPPPKPGG DHPSPGRSPN LNLPCPPLPP IVPSPSPAPP PPPHHRRARS EVAFRFPEDL  60
GLGGGSGGDG ASFDEIGSED DLLFSTFMDM DKIAGGGADR DSRAAETSSP PRPTKHRHSA  120
SFDGFAFSAG APGTATKQQD GGGGVGFAAD VMEAKKAMSS EQLAELAAID PKRAKRILAN  180
RQSAARSKER KARYITELER KVQTLQTEAT TLSAQLTLFQ RDTTGLSAEN AELKIRLQAM  240
EQQAQLRDAL NDALKQEVER LKIATGEMTK SNEAYNTGMQ QVPYSPSFFQ LSEQHAVQHH  300
AGIQQLTHQF QQSHPSVPIH QMLSHPNSLS DMMQQDSLGR LQGLDIGKGP VAVKSEAEVV  360
VKSEGSSISA GESNSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G23230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102562	0.0	AK102562.1 Oryza sativa Japonica Group cDNA clone:J033097I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646776.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-137	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A0D9X2Y5	0.0	A0A0D9X2Y5_9ORYZ; Uncharacterized protein
STRING	LPERR07G23230.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-79	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]