PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G02130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LSD
Protein Properties Length: 149aa    MW: 16060.5 Da    PI: 8.8745
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G02130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD127.74.5e-094769123
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                     C+gC tlL Y rGA+++RC++C+
  LPERR08G02130.1 47 CSGCPTLLFYNRGASNIRCPSCN 69
                     **********************8 PP
2zf-LSD132.51.5e-1087111125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Crt+L+ P+GA+ V+Ca C  V
  LPERR08G02130.1  87 CGQCRTTLMHPPGASTVQCATCRYV 111
                      **********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.0E-6434IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-4730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-104572IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-94769IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.9E-1184114IPR005735Zinc finger, LSD1-type
PfamPF069433.0E-1187111IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MQDQLICSGC RRVVQYRRGV AGVCCPGCNT LTAVDPSAAA NMSELICSGC PTLLFYNRGA  60
SNIRCPSCNR LNSTRSAAAN QIAHLTCGQC RTTLMHPPGA STVQCATCRY VNHVRDARPQ  120
TVLVENPKTL DDKGKLVSNM VVGVTSWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G02130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1204540.0AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence.
GenBankCT8307650.0CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659091.11e-101PREDICTED: protein LOL4
SwissprotQ84UR01e-101LOL4_ORYSJ; Protein LOL4
TrEMBLA0A0D9X4301e-105A0A0D9X430_9ORYZ; Uncharacterized protein
STRINGLPERR08G02130.11e-106(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.65e-40LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]