PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G02800.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 285aa    MW: 30906.1 Da    PI: 6.5149
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G02800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-131458347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +W++eE+++++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  LPERR08G02800.1 14 AWSEEEHKKFLLGLNKLGKGDWRGISRNYVVSRTPTQVASHAQKY 58
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.512163IPR017930Myb domain
SMARTSM007174.6E-101161IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-151264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-101357IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-171362IPR006447Myb domain, plants
PfamPF002496.3E-111458IPR001005SANT/Myb domain
CDDcd001674.12E-91459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMLSKGNHCS NGEAWSEEEH KKFLLGLNKL GKGDWRGISR NYVVSRTPTQ VASHAQKYFI  60
RQTNVHRRKR RTSLFDMVME DSDDQPLSRT SSQEIEENLE DASPVTTPVI PPAAVPMLSS  120
SSVPPPVPVM APVAPGPMLT SSSAEPQPEE KEAVASGSNT PETGAAIPEV MPPYGGYPMM  180
LPPYYPPAFV PMPYYGYVPV FYAPPGPEQA PHEVFKPVAL HSKPPVHIDE LYSMSELSLK  240
GETSVNNGTP NCPLPPKPIG RPERQSAFHG KGPADGSSNG LIPAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G02800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-132CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651035.11e-140transcription factor MYBS3-like
TrEMBLA0A0D9X4B40.0A0A0D9X4B4_9ORYZ; Uncharacterized protein
STRINGLPERR08G02800.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.17e-27MYB_related family protein