PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03010.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 347aa    MW: 36744.5 Da    PI: 9.5141
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.2e-1499143347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  LPERR08G03010.1  99 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 143
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.43192148IPR017930Myb domain
SuperFamilySSF466891.08E-1793148IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-1895147IPR006447Myb domain, plants
SMARTSM007173.5E-1196146IPR001005SANT/Myb domain
CDDcd001678.02E-1099144No hitNo description
PfamPF002495.0E-1299143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-1299142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MPRDSHAAAA GGMRLFGVTI APAAQSPEPD PSDGRDPSPP VVAVREDAMR KCKSMGNLAA  60
AAAGAGDAGG SGDGYLSDGG LLQSPGKRRR AQERKKAVPW TEEEHRTFLA GLEKLGKGDW  120
RGISKNFVTT RTPTQVASHA QKYFLRQTNP NKKKRRSSLF DMMATDMSPA PNCSMLTSST  180
SMGKLHDMVE MTKQLKNSTL EGVSSSSAVN LAPPVARDLP PPIPSFKATN VDSSLSKMNH  240
MEDFLRAPML FRPISRIADG ASSSTPATAN IAAPAFQANL TACTNAFWSP KSKPSPLPKK  300
ADPPAENDLD LTVAPPSQQT RASISSQNAV GCDLLSGDTL EASLDDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420170.0AK242017.1 Oryza sativa Japonica Group cDNA, clone: J075110L24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695707.11e-163PREDICTED: transcription factor MYB1R1-like isoform X2
TrEMBLA0A0D9X4E10.0A0A0D9X4E1_9ORYZ; Uncharacterized protein
STRINGLPERR08G03010.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.18e-38MYB_related family protein