PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03480.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 770aa    MW: 84257.4 Da    PI: 7.1479
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03480.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-1573117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  LPERR08G03480.2  73 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 117
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-1667123IPR009057Homeodomain-like
PROSITE profilePS5129419.14768122IPR017930Myb domain
TIGRFAMsTIGR015571.8E-1671120IPR006447Myb domain, plants
SMARTSM007176.5E-1272120IPR001005SANT/Myb domain
PfamPF002491.6E-1273116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-873113IPR009057Homeodomain-like
CDDcd001671.14E-875118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MTMLLSRRRR GRPWPACGGL GLLRGASQRA RRQRTRLKEV SGLSRLTAIG SIQINSSGEE  60
AMVRKPYTIT KQRERWTEAE HKRFLEALKL YGRAWQRIEE HVGTKTAVQI RSHAQKFFTK  120
LEKEAINNGT SPGQAHDIDI PPPRPKRKPN SPYPRKSCLS SETSTREIPN DKATKSNLTV  180
NSTAQMAGDA ALEKLQRKEI SEKGSCSEVL NLFREAPSAS FSSVNKSSSN HGASRGLEPT  240
KTEIKDVVIL ERDGISNGAG KNVKDINDQE TERLNGIHIS SKSDHSHENC LDTSRQQLKP  300
KATAVEPTYV DWSAAKTSHC QMDRNGATGF PATGTEGSHP DQTSDQTGRT SETMNQCIHP  360
TLSVDPKFDS TATAQPFPHN YAAFAPMMQC HCNQDSYRSF VNMSSTFSSM LVSTLLSNPA  420
IHAAARLAAS YWPAVDGNSA DPNQEDLSES AQGSHAGSPP NMASIVAATV AAASAWWATQ  480
GLLPLFPPPI AFPFVPAPST PFPAADVQRA PEKDMNCPID SAQKEMQETQ KQDNPEAIKV  540
IMSSESDESG KGEVSLHTEL KISPADKADA TPTTGADTSD VFGNKKKQDR SSCGSNTPSS  600
SDHDIEADNA PEKQEKANDK AKQASCSNSS AGDNNHRRFR SSGSTSDSWK EVSEEGRLAF  660
DALFSRERLP QSFSPPQAEE SKEISKEEED EVTTVTVDLN KNATIIDHEL DTVDDPRAFF  720
PNELSNLKLK SRRTGFKPYK RCSVEAKENR VPASDEVGTK RIRLDSETST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12835RARRQRTR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427710.0AK242771.1 Oryza sativa Japonica Group cDNA, clone: J090053J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649844.10.0protein LHY isoform X2
RefseqXP_015649845.10.0protein LHY isoform X2
TrEMBLA0A0D9X4L60.0A0A0D9X4L6_9ORYZ; Uncharacterized protein
STRINGLPERR08G03480.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.42e-37MYB_related family protein