PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03510.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 690aa    MW: 76592.9 Da    PI: 4.4737
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-5191421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrFhPtdeelv +yLk k++g+   ++evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ +
  LPERR08G03510.2   9 LPLGFRFHPTDEELVRHYLKGKITGQIRGETEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRII 102
                      699************************99999***************96446677888************************************ PP

              NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  LPERR08G03510.2 103 KSKgdkkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                      **977655666***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-583163IPR003441NAC domain
PROSITE profilePS5100556.9929163IPR003441NAC domain
PfamPF023651.2E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRGETE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGDKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPQFESG EQGGYVLYRL FRKQEEKIER PSLDEMDRSG  180
YSPTPSRSTP DNMEPNEDGN TPLNKESPES ALHESPIDLP ALTEAPAAPI TRWLADTADN  240
VTTNEANISH MPFHGLDGGA KASPSVGAST QLIHSRKNIY DNDELATVSA PMLPLQDFGE  300
FPLGAIGNFD GNMKPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIVL TEFENPGMMQ  360
GGFMDDPSGL ENLSFWPDDT NPQLSALYEN ATLLPYDISA DQDVLSMDSG AESLQDLFNS  420
LEDSSTKINT WNNEPVFQGT GIEIYEQLQS NDIFVNQGTA RRRLRLQQSE SLSPDFEDEE  480
SGIVVTSKYV NEVAEESTAE KDMPSDGDDA ESTGITILRR RQAPTASSDD EEAESTGITI  540
LRRRHAPTAS SGSFTQQGAA VRRVRLQCDL NAAPCSSGDG SSSCIIDESE SECTMEKAEI  600
EEHTRTTLAE GVDLSGPEHD ASAVVADDKS VLRQRKTAEG SDKENKQDYC VLDSHVRAPV  660
KKRGFPAYII WLVLSLALVL LIFVGIYGWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-45916417166NO APICAL MERISTEM PROTEIN
1ut4_B3e-45916417166NO APICAL MERISTEM PROTEIN
1ut7_A3e-45916417166NO APICAL MERISTEM PROTEIN
1ut7_B3e-45916417166NO APICAL MERISTEM PROTEIN
3swm_A3e-45916420169NAC domain-containing protein 19
3swm_B3e-45916420169NAC domain-containing protein 19
3swm_C3e-45916420169NAC domain-containing protein 19
3swm_D3e-45916420169NAC domain-containing protein 19
3swp_A3e-45916420169NAC domain-containing protein 19
3swp_B3e-45916420169NAC domain-containing protein 19
3swp_C3e-45916420169NAC domain-containing protein 19
3swp_D3e-45916420169NAC domain-containing protein 19
4dul_A3e-45916417166NAC domain-containing protein 19
4dul_B3e-45916417166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03510.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8469940.0EU846994.1 Oryza sativa Japonica Group clone KCS281G09 NAC2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650289.10.0NAC domain-containing protein 14 isoform X2
TrEMBLA0A0D9X4M00.0A0A0D9X4M0_9ORYZ; Uncharacterized protein
STRINGLPERR08G03510.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-70NAC transcription factor-like 9