PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G03560.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LSD

Protein Properties

Length: 122aa MW: 12891.1 Da PI: 7.816

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G03560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.5	2.5e-14	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV LPERR08G03560.1 27 CSGCRNLLMYPAGATSVCCAVCSTV 51 ***********************99 PP
2	zf-LSD1	47.2	3.6e-15	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV LPERR08G03560.1 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.6E-14	24	54	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-11	27	51	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	3.91E-5	27	107	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	6.5E-15	63	92	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-12	66	90	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.8E-5	101	118	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.0E-5	104	118	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MPVPLAPYPT PPVPFTPPNG GQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGNCRML LMYQYGARLY 120 HH

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G03560.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY525368	1e-160	AY525368.1 Oryza sativa (japonica cultivar-group) zinc finger protein LSD1 mRNA, complete cds.
GenBank	CT832471	1e-160	CT832471.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042K01, full insert sequence.
GenBank	CT832472	1e-160	CT832472.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027E05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269986.1	1e-73	PREDICTED: protein LSD1
Refseq	XP_010269987.1	1e-73	PREDICTED: protein LSD1
Refseq	XP_010269988.1	1e-73	PREDICTED: protein LSD1
Swissprot	Q0J7V9	2e-69	LSD1_ORYSJ; Protein LSD1
TrEMBL	A0A0D9X4M6	6e-82	A0A0D9X4M6_9ORYZ; Uncharacterized protein
STRING	OMERI08G03620.1	1e-79	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	7e-50	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]