PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G04370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 167aa    MW: 18361.3 Da    PI: 4.4159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G04370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-163079255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y GVr+++ +g+++AeIr p++   + r++lg+f+taeeAa a++  + ++ g
  LPERR08G04370.1 30 EYLGVRRRP-WGKYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDLSAISISG 79
                     588******.**********865...5*******************99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-182987IPR016177DNA-binding domain
CDDcd000187.18E-252987No hitNo description
PROSITE profilePS5103220.5343088IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-263087IPR001471AP2/ERF domain
SMARTSM003804.8E-263094IPR001471AP2/ERF domain
PfamPF008476.2E-93175IPR001471AP2/ERF domain
PRINTSPR003673.5E-93142IPR001471AP2/ERF domain
PRINTSPR003673.5E-95369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAEQPQQQQM TTAMAAQQQR RRRRARASSE YLGVRRRPWG KYAAEIRNPY TKERHWLGTF  60
DTAEEAAVAY DLSAISISGK AAARTNFVYP DDAALSQSPA PAIPPPPPPP PSPMDDDDDD  120
YVCSPVMVVE GIEDGDDDSL TIATILQSFQ YQQSFSPAAA SSGSLFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1729871371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11936RRRRRARASSEYLGVRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G04370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417622e-70AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051642e-70AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149642e-70AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-70CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445135.28e-48ethylene-responsive transcription factor LEP
SwissprotQ3E7038e-32ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A0D9X4W71e-117A0A0D9X4W7_9ORYZ; Uncharacterized protein
STRINGLPERR08G04370.11e-118(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.15e-31ERF family protein