PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G04910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 697aa    MW: 79336.9 Da    PI: 8.8055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G04910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.2e-092557337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      W+++E +++++a +++G++ Wk++++ +g g+++
  LPERR08G04910.1 25 QWSKDELLRFYEAYHRHGKN-WKKVSASVG-GKSA 57
                     6*****************99.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.7752178IPR017884SANT domain
SMARTSM007170.00552270IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-82471IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-42561IPR009057Homeodomain-like
PfamPF002492.9E-82558IPR001005SANT/Myb domain
CDDcd001671.50E-42657No hitNo description
SMARTSM011351.2E-12454551IPR033471DIRP domain
PfamPF065848.9E-19454520IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MSAWWFSLPI FVGSQKRKMS DLGPQWSKDE LLRFYEAYHR HGKNWKKVSA SVGGKSADRV  60
EALYSAHKTF LSLPEREGTA MGFVALVTGH HNVSDESKRH KEGDQTVRAS RKTWTCGEAT  120
GKKERELPNA HRSYHERTYG LSSFKKRYYR ELVENIPRHH SAKRTPCVPI IIPADMNVAD  180
AATPAKENAV NSTKKASEAI NNELGCSRDE SSGIPETFLQ TTRIGDSQIS PTLGGLKKRR  240
IEKSMDLTDY QNLSQIFSPD TLTHFPFYEM LTLDVLETLV TVPSEISEPK INIPSGILGK  300
NDSALSLKRV EGTSSVKRSK QGKQVGECIS KKRNKRRKKS IAEVVPAEEP NISNHLNLPE  360
ERQADATECA LNFDPERGLV DLPESTANIC SEVPDLTSQT KPEINMFRRS KRKSKRQCGS  420
KYAISNRSDN LQARRLQHCL SSESLRRWCT YEWFYSAFDY PWFMDNDLVN YLNFANLSHL  480
SRLTRSEWST IKSSLGKPRR FSDHFLVVEK EKLEVYRKKV IVCHPMTREL SDGEVVMMEY  540
DGYRVQFDRP DVGVDKVKDT ECMPVNWLDN LPNDLKRKSF LLNNSHNREV EQIPDLTSNE  600
IWDHISGEPV PSKTMHRTSD EQVEIALDTK RLSNKSTSGN CGPLQPLQRP GACMHNAAPK  660
LFTEHPDHIY DCICVIKNQI LALVPTASSN AWLPMYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407415RRSKRKSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G04910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699150.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X2
TrEMBLA0A0D9X5410.0A0A0D9X541_9ORYZ; Uncharacterized protein
STRINGLPERR08G04910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-47DNA binding