PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G04910.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 580aa    MW: 66471.4 Da    PI: 9.0465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G04910.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.3e-102557337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      W+++E +++++a +++G++ Wk++++ +g g+++
  LPERR08G04910.2 25 QWSKDELLRFYEAYHRHGKN-WKKVSASVG-GKSA 57
                     6*****************99.*********.9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.7752178IPR017884SANT domain
SMARTSM007170.00552270IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-92471IPR009057Homeodomain-like
PfamPF002492.2E-82558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-42561IPR009057Homeodomain-like
CDDcd001671.96E-42657No hitNo description
SMARTSM011351.2E-12337434IPR033471DIRP domain
PfamPF065846.9E-19337403IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSAWWFSLPI FVGSQKRKMS DLGPQWSKDE LLRFYEAYHR HGKNWKKVSA SVGGKSADRV  60
EALYSAHKTF LSLPEREGTA MGFVALVTGH HNVSDESKRH KEGDQTVRAS RKTWTCGEAT  120
GKKERELPNA HRSYHERTYG LSSFKKRYYR DEMLTLDVLE TLVTVPSEIS EPKINIPSGI  180
LGKNDSALSL KRVEGTSSVK RSKQGKQVGE CISKKRNKRR KKSIAEVVPA EEPNISNHLN  240
LPEERQADAT ECALNFDPER GLVDLPESTA NICSEVPDLT SQTKPEINMF RRSKRKSKRQ  300
CGSKYAISNR SDNLQARRLQ HCLSSESLRR WCTYEWFYSA FDYPWFMDND LVNYLNFANL  360
SHLSRLTRSE WSTIKSSLGK PRRFSDHFLV VEKEKLEVYR KKVIVCHPMT RELSDGEVVM  420
MEYDGYRVQF DRPDVGVDKV KDTECMPVNW LDNLPNDLKR KSFLLNNSHN REVEQIPDLT  480
SNEIWDHISG EPVPSKTMHR TSDEQVEIAL DTKRLSNKST SGNCGPLQPL QRPGACMHNA  540
APKLFTEHPD HIYDCICVIK NQILALVPTA SSNAWLPMYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290298RRSKRKSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G04910.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643869.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBLA0A0D9X5420.0A0A0D9X542_9ORYZ; Uncharacterized protein
STRINGLPERR08G04910.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.26e-48DNA binding