PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G05240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YA
Protein Properties Length: 179aa    MW: 19824.6 Da    PI: 9.996
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G05240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1025.5e-3269124258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      ep+YVNa+Qy++Il+RRq+Rak+e+e+k   k rkpylheSRh hAl+R+RgsgGrF
  LPERR08G05240.1  69 EPIYVNARQYHGILRRRQSRAKAESENKA-VKIRKPYLHESRHLHALKRARGSGGRF 124
                      8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-3366127IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.53867127IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.4E-2769124IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.1E-247092IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.1E-24101124IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEVRLDKQII IPPGLINTSF VFQAQVAYPY IGTYYGGIYG AYSGQPLVNA ALMAMPPHSV  60
PLVTDAMVEP IYVNARQYHG ILRRRQSRAK AESENKAVKI RKPYLHESRH LHALKRARGS  120
GGRFLNSKAV EGKQYSNSVD KKDGAVSSEE NRDKEINICT KSENVSPTNQ PGADVPNIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-2167128162NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G05240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880271e-142AB288027.1 Oryza sativa Japonica Group OsHAP2A mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0599031e-142AK059903.1 Oryza sativa Japonica Group cDNA clone:006-208-G09, full insert sequence.
GenBankHQ7314791e-142HQ731479.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648196.19e-91nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLA0A0D9X5911e-129A0A0D9X591_9ORYZ; Uncharacterized protein
STRINGLPERR08G05240.11e-130(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165581313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.14e-36nuclear factor Y, subunit A4