PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G06220.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 133aa    MW: 15198.8 Da    PI: 10.0001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G06220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.41.1e-092111712114
              NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelv 100
                       +lv++yL +++ + +l++   i++++i++++Pwd+         ++yfF++++ k    + ++ +  +g+     k  +v+ +      + lv
  LPERR08G06220.1  21 ANLVCHYLYRHAINLPLPF---ITDINIMHHKPWDIV--------QLYFFMRKEIKFLVATIATVSPVTGFGDRYAKRSPVYYNprdgrYNMLV 103
                      579*************888...9*************5........68*******9999888777777799************98776555556* PP

              NAM 101 glkktLvfykgrap 114
                      g+k+tL+fy g+++
  LPERR08G06220.1 104 GMKHTLTFYYGKDS 117
                      *********88764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023653.9E-519116IPR003441NAC domain
SuperFamilySSF1019417.85E-922117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MMHATGGGSN LPFGSAKTTV ANLVCHYLYR HAINLPLPFI TDINIMHHKP WDIVQLYFFM  60
RKEIKFLVAT IATVSPVTGF GDRYAKRSPV YYNPRDGRYN MLVGMKHTLT FYYGKDSLQS  120
ALMGHEIILP RKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G06220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9X5M11e-95A0A0D9X5M1_9ORYZ; Uncharacterized protein
STRINGLPERR08G06220.12e-96(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-09NAC domain containing protein 41