PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G06500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WOX
Protein Properties Length: 237aa    MW: 24928.7 Da    PI: 8.2213
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G06500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.45.1e-083402457
                     S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +p +ee +++ + l     + +++V++WFqNrR + ++
  LPERR08G06500.1  3 NPAKEETARIRRLLerfgPVRDANVFYWFQNRRSRSRR 40
                     5777777777777777777999*************997 PP
2Wus_type_Homeobox59.11.1e-191412464
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++
    LPERR08G06500.1  1 MVNPAKEETARIRRLLERFGPVRDANVFYWFQNRRSRSRRR 41
                       78*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.183141IPR001356Homeobox domain
SuperFamilySSF466891.71E-6346IPR009057Homeodomain-like
PfamPF000461.1E-5340IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-41847IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVNPAKEETA RIRRLLERFG PVRDANVFYW FQNRRSRSRR RARQLQQASS AATAAGAGGG  60
GGGGGGGYYH STSTFLVHGG GVPSTAVSPP ASAAASAAQF LVDDVIDAGG DEDLFAISRQ  120
MGLMARGGGD YYGSYGDNES TGQLSYHQPT GTATTIQVFI NGVAYDVPSG GALDMAGTFG  180
CDAMLVHSSG EVLPVDQHGV LINSLQMGGC YYLDKKTALH TKRTIHSISS WKTPKSD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G06500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1073051e-75AK107305.1 Oryza sativa Japonica Group cDNA clone:002-126-D01, full insert sequence.
GenBankAP0052491e-75AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBankAP0149641e-75AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-75CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649642.11e-76WUSCHEL-related homeobox 10
SwissprotA2YST12e-78WOX10_ORYSI; WUSCHEL-related homeobox 10
TrEMBLA0A0D9X5Q61e-173A0A0D9X5Q6_9ORYZ; Uncharacterized protein
STRINGLPERR08G06500.11e-174(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.12e-13WUSCHEL related homeobox 11