PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G07840.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 157aa    MW: 16474.6 Da    PI: 7.6296
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G07840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-0596118123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C + F ++  L  H++ H
  LPERR08G07840.1  96 FKCNYCQRKFYTSQALGGHQNAH 118
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-793123No hitNo description
Gene3DG3DSA:3.30.160.603.9E-494122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57296123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MASSSQTVSM EAAPPPVKVD HGEEAEVEAP APAASAAMEL DLLGALRAEA REEEKGKAAA  60
VSFGEAAAAE EKAPPPNSVA AVAAAGGAGE VRRRMFKCNY CQRKFYTSQA LGGHQNAHKR  120
ERSLAKRGAA EYSFIHAWKR ASGLSGLHPD LFTMPLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G07840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875762.11e-23zinc finger protein 4
TrEMBLA0A0D9X6821e-108A0A0D9X682_9ORYZ; Uncharacterized protein
STRINGLPERR08G07840.11e-109(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-17zinc-finger protein 1