PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G08210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 336aa    MW: 37389.6 Da    PI: 5.1421
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G08210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.97.4e-082703032154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  LPERR08G08210.1 270 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 303
                      569*****************************87 PP
2ELK28.14.7e-10224245122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  LPERR08G08210.1 224 ELKHELKQGYKEKLVDIREEIL 245
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.2E-1862106IPR005540KNOX1
PfamPF037901.5E-1664104IPR005540KNOX1
SMARTSM012566.6E-27113169IPR005541KNOX2
PfamPF037911.5E-18121168IPR005541KNOX2
PfamPF037891.7E-6224245IPR005539ELK domain
SMARTSM011889.2E-4224245IPR005539ELK domain
PROSITE profilePS5121310.144224244IPR005539ELK domain
PROSITE profilePS5007111.742244307IPR001356Homeobox domain
SMARTSM003894.8E-11246311IPR001356Homeobox domain
SuperFamilySSF466893.55E-16246311IPR009057Homeodomain-like
CDDcd000861.03E-11247308No hitNo description
Gene3DG3DSA:1.10.10.604.0E-25251308IPR009057Homeodomain-like
PfamPF059209.3E-18264303IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAFHGHLPHE MSMQALAADD AAAAAATDED HEPIPDGWWF DDAGIXGGGE AEMGGGGEAE  60
AARCKGEILG HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSPSVVSK YSALAAAGDD  120
ARELDQFMTH YVLLLCSFKE QLQQHVRVHA MEAVMACWEL EQNLQSLTGA SPGEGTGATM  180
SDGEDDQTDS EANMYDPSMD GGDNMGFGLP TESERSLMER VRQELKHELK QGYKEKLVDI  240
REEILRKRRA GKLPGDTTST LKAWWQSHAK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  300
RKRNWHSNPS SSSNVKTKRK RFVLSQTHLS IQFNNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A8e-13247311872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300320RKRNWHSNPSSSSNVKTKRKR
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G08210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345860.0CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650701.21e-179LOW QUALITY PROTEIN: homeobox protein knotted-1-like 13
SwissprotQ0J6N41e-179KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0D9X6D30.0A0A0D9X6D3_9ORYZ; Uncharacterized protein
STRINGLPERR08G08210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-160KNOTTED1-like homeobox gene 3