PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G10430.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CPP
Protein Properties Length: 746aa    MW: 83778.6 Da    PI: 7.7867
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G10430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.48.1e-15125165141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgCnCkks+ClkkYCeCf+  ++Cs++CkC +CkN e+
  LPERR08G10430.1 125 KHTKGCNCKKSECLKKYCECFKFSVFCSKKCKCMGCKNYES 165
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163415.603109165IPR005172CRC domain
SMARTSM011141.9E-15125166IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.5E-11128163IPR005172CRC domain
SMARTSM002683.9E-180369744IPR004000Actin family
PfamPF000221.6E-103372742IPR004000Actin family
Gene3DG3DSA:3.30.420.403.0E-52372543No hitNo description
SuperFamilySSF530674.53E-41372511No hitNo description
PRINTSPR001909.9E-27382391IPR004000Actin family
CDDcd000124.79E-16408547No hitNo description
PRINTSPR001909.9E-27419441IPR004000Actin family
PRINTSPR001909.9E-27473486IPR004000Actin family
PRINTSPR001909.9E-27498517IPR004000Actin family
SuperFamilySSF530671.38E-70504741No hitNo description
Gene3DG3DSA:3.90.640.104.1E-32544614No hitNo description
PRINTSPR001909.9E-27594610IPR004000Actin family
Gene3DG3DSA:3.30.420.404.3E-19615741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007015Biological Processactin filament organization
GO:0009825Biological Processmultidimensional cell growth
GO:0010090Biological Processtrichome morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MDKSLQLPSG SVKIDFASAL YAGKAEIAAT AAALSLALGP PRTPQCYQHS LTKVNTALSL  60
WPPVLCPSEF AKKRPMSSPS TPPAKKLQVQ QSLPMLPRAF PNIEVLSIKR PAKLQDKATE  120
GLVGKHTKGC NCKKSECLKK YCECFKFSVF CSKKCKCMGC KNYESNKERK AIQPITQQHT  180
VDMHYVQNPA SSGIIEQSAC GISSRYCEYE SFHVMVCLKV TNISGIKENS KRKRLNRAES  240
CLSSTNHDSE AFQKEPAKQM CSLEKNLNLD LIAEGSMELP RADTYDVQKG NKRPLSPRTQ  300
ALMCDEQDAV FQESKVSRAT PSTMEENLLD IFKEQEKRVL TNFRDYLCEL ANCGRLQVAV  360
AEDGLKMTEQ VYVKCGFAGE NFPTSVFPCV VGRPLLRYEE SLQEQELTDI VVGAACADLR  420
HQLDVSYPVT NGIVQSWDDM GHIWDHAFYS ELKVDPSECK ILLTDPPLNP VKNREKMIET  480
MFEKYNFAGV FIQVQAVLSL YAQGLLTGLV IDSGDGVTHV VPVVDGFSYP HITKRMNVAG  540
RHITSYLVDL LSRRGYAMNK SADFETVREI KEKLCYLSYD YKREYQLGLE TTILVKSYTL  600
PDGRVIKVGT ERFQAPEALF TPELIDVEGD GMADMAFRCI QEMDIDNRMT LYQHIVLSGG  660
STMYPGLPSR LEKEMLDRYL DVVLKGNKDG LKKLRLRIED PPRRKHMVYL GGAVLAGIMK  720
DAPEFWITRQ EYQEEGLACL RKCGQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tyq_B1e-17737274417390Actin-related Protein 2
1u2v_B1e-17737274417390Actin-Related Protein 2
2p9i_B1e-17737274417390Actin-like protein 2
2p9l_B1e-17737274417390Actin-like protein 2
2p9n_B1e-17737274417390Actin-like protein 2
2p9p_B1e-17737274417390Actin-like protein 2
2p9s_B1e-17737274417390Actin-like protein 2
2p9u_B1e-17737274417390Actin-like protein 2
3dxk_B1e-17737274417390Actin-related protein 2
3dxm_B1e-17737274417390Actin-related protein 2
3rse_B1e-17737274417390Actin-related protein 2
3ukr_B1e-17737274417390Actin-related protein 2
3uku_B1e-17737274417390ACTIN-LIKE PROTEIN 2
3ule_B1e-17737274417390Actin-related protein 2
4jd2_B1e-17737274417390Actin-related protein 2
4xei_B1e-17737274417390Actin-related protein 2
4xf2_B1e-17737274417390Actin-related protein 2
4xf2_U1e-17737274417390Actin-related protein 2
6dec_B1e-17737274417390Actin-related protein 2
6dec_I1e-17737274417390Actin-related protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G10430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648325.10.0actin-related protein 2
RefseqXP_015648326.10.0actin-related protein 2
SwissprotA2YUL50.0ARP2_ORYSI; Actin-related protein 2
TrEMBLA0A0D9X7850.0A0A0D9X785_9ORYZ; Uncharacterized protein
STRINGLPERR08G10430.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP988922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.12e-19Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Kandasamy MK,Deal RB,McKinney EC,Meagher RB
    Plant actin-related proteins.
    Trends Plant Sci., 2004. 9(4): p. 196-202
    [PMID:15063870]