PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G11030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 309aa    MW: 33064.9 Da    PI: 6.5659
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G11030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.34.9e-26128188259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r+++d ++++++Y+g+H+++
  LPERR08G11030.1 128 EDGHSWRKYGQKDILGAKHPRGYYRCTHRntqGCAATKQVQRTDHDSSLFDVVYHGHHTCN 188
                      7***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27115190IPR003657WRKY domain
PROSITE profilePS5081122.848122190IPR003657WRKY domain
SuperFamilySSF1182904.32E-25123190IPR003657WRKY domain
SMARTSM007741.1E-37127189IPR003657WRKY domain
PfamPF031061.3E-25128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEVVVTDGSR AQAQAQQLVV AELGRVKELL RQLELHLHEP DLCRGLAAQI VALTDRSIGI  60
ARSSFPSAAA AHFADTPPPA LVSGTPSPLS DASVDHHPFT TTPNPNPKKR KATARWRSQV  120
RVSAAAEEDG HSWRKYGQKD ILGAKHPRGY YRCTHRNTQG CAATKQVQRT DHDSSLFDVV  180
YHGHHTCNRP SSSAAIKKPH AAAQSLLQSL AAGLTVDTEN ATDCAMTQPP VAAVASVSPS  240
LTTSPVASGY GDWWCCDGGE LQEVVSALAA VTAVADVPEP AIDADFMNLN YYFEFDPSFG  300
ALDSATLFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20112191180Disease resistance protein RRS1
5w3x_D1e-20112191180Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G11030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116065e-54AK111606.1 Oryza sativa Japonica Group cDNA clone:J013102P22, full insert sequence.
GenBankAY6769315e-54AY676931.1 Oryza sativa (indica cultivar-group) transcription factor WRKY69 (WRKY69) mRNA, complete cds.
GenBankHQ8588355e-54HQ858835.1 Oryza sativa Japonica Group isolate UT1345 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651040.11e-109probable WRKY transcription factor 54
TrEMBLA0A0D9X7G80.0A0A0D9X7G8_9ORYZ; Uncharacterized protein
STRINGLPERR08G11030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.14e-29WRKY DNA-binding protein 30