PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G11750.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ERF

Protein Properties

Length: 258aa MW: 28000.2 Da PI: 7.1631

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G11750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.4e-20	93	142	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa +++a+ +l+g LPERR08G11750.1 93 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALTYDQAAYRLRG 142 59****9.******955...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	6.27E-30	92	152	No hit	No description
SMART	SM00380	5.0E-34	93	156	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.8E-32	93	152	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.024	93	150	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.53E-22	93	152	IPR016177	DNA-binding domain
Pfam	PF00847	4.8E-14	94	142	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-11	94	105	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.8E-11	116	132	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAAAIDRSGD LMRAMGDAQF PRPAFHPALP PAPATGGHGF RYMGPAQLSP AQIQYVQAQL 60 HLQRQAHSAL GPRAQPMKPA ASSPPAAPRP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL 120 GTFDTAEEAA LTYDQAAYRL RGDAARLNFP DNAASRGPLD PAVDAKLQAI CDTIASSKNN 180 ASSSRAARAV PINAPPVSST TTHSSDDDGS ETTSSASPLA EMEQLDFSEV PWDEAEGFAL 240 TKYPSYEIDW DSLLNNNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-19	92	150	4	63	ATERF1
3gcc_A	1e-19	92	150	4	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G11750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068312	1e-154	AK068312.1 Oryza sativa Japonica Group cDNA clone:J013151K12, full insert sequence.
GenBank	AK105725	1e-154	AK105725.1 Oryza sativa Japonica Group cDNA clone:001-201-G08, full insert sequence.
GenBank	AP004658	1e-154	AP004658.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0042B03.
GenBank	AP004691	1e-154	AP004691.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0453D01.
GenBank	AP014964	1e-154	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-154	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBank	CT831646	1e-154	CT831646.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G01, full insert sequence.
GenBank	FJ940221	1e-154	FJ940221.1 Oryza sativa Japonica Group clone KCS046C03 AP domain DRE binding factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650910.1	1e-122	ethylene-responsive transcription factor RAP2-4
Swissprot	Q8H1E4	7e-55	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A0D9X7Q7	0.0	A0A0D9X7Q7_9ORYZ; Uncharacterized protein
STRING	LPERR08G11750.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP382	35	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39780.1	9e-51	ERF family protein

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]