PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G12860.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27705.4 Da    PI: 8.6255
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G12860.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.4e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien + rqvtfskRr g++KKA+ELS+LCdaev +++fsstg+ly+++s
  LPERR08G12860.2  9 KRIENATSRQVTFSKRRSGLFKKAKELSILCDAEVGLVVFSSTGRLYDFAS 59
                     79***********************************************86 PP
2K-box73.46.5e-2574166698
            K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ++ +a+s  +e+a L+++++nLq+ +R+llG++ + L++++Lq+Le++Le sl++iR kK++++l+qi+el  k   +++en++Lrkk+
  LPERR08G12860.2  74 EDPHHTMNASSEAKEAASLRQQLHNLQEYHRQLLGQQFSGLDVEDLQNLESKLEMSLRNIRLKKDNVMLDQIQELSSKGSLIHQENMELRKKV 166
                      334778889999*******************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.137161IPR002100Transcription factor, MADS-box
CDDcd002654.78E-45275No hitNo description
SuperFamilySSF554554.06E-33280IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.86582172IPR002487Transcription factor, K-box
PfamPF014863.7E-2384166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKIEIKR IENATSRQVT FSKRRSGLFK KAKELSILCD AEVGLVVFSS TGRLYDFAST  60
SMKSIIERYN ETTEDPHHTM NASSEAKEAA SLRQQLHNLQ EYHRQLLGQQ FSGLDVEDLQ  120
NLESKLEMSL RNIRLKKDNV MLDQIQELSS KGSLIHQENM ELRKKVSLVH EENINLQKKV  180
YGPQGINEHS TGSPTQHSFL TRENEIGPNL ELSLPENVEK DGLGIAKAVR RCRCKASTQP  240
CREN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-23179178MEF2C
5f28_B7e-23179178MEF2C
5f28_C7e-23179178MEF2C
5f28_D7e-23179178MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G12860.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3452201e-167AY345220.1 Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883353.11e-136MADS-box transcription factor 23 isoform X2
SwissprotQ6VAM48e-97MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLA0A0D9X8451e-179A0A0D9X845_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9X8461e-179A0A0D9X846_9ORYZ; Uncharacterized protein
STRINGLPERR08G12860.11e-179(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-80AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  3. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]