PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G12880.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 225aa    MW: 24548.9 Da    PI: 4.8866
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G12880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.32.8e-34611673111
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 
                       ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt+eWLl q+ +ai+ l  ++ ++a  +  +      +a++++++ a++s+
  LPERR08G12880.1  61 LRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASKTVEWLLAQSRKAIDSLSLSDYDHAAVAvaS----PPEAKEKGEAPASSSS 150
                      689************************************************************77777222221....1111111222222222 PP

              TCP  95 akskksqksaasalnla 111
                      +++ ++++++a+a+   
  LPERR08G12880.1 151 TTNASTKDDDAAARGAE 167
                      22222222222233333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.37562120IPR017887Transcription factor TCP subgroup
PfamPF036348.7E-3362156IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPSSSSSPSL DDYDATRFFF HHHQQHQAET LEAVVNTAAA PAAAAEVGPA SASAAGRRRP  60
LRTDRHSKIR TAQGVRDRRM RLSVGVARDF FALQDKLGFD KASKTVEWLL AQSRKAIDSL  120
SLSDYDHAAV AVASPPEAKE KGEAPASSSS TTNASTKDDD AAARGAEKAT SPPAVELDWP  180
LSPAAAEQPV DGWEYYYQYY NHLEEIMSCE PSTTDEFICS EEEWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1367120154Putative transcription factor PCF6
5zkt_B4e-1367120154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G12880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5786724e-51KM578672.1 Arthraxon prionodes isolate TK103-vimineum6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786734e-51KM578673.1 Arthraxon prionodes isolate TK103-vimineum8 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786744e-51KM578674.1 Arthraxon prionodes isolate TK103-vimineum5 retarded palea 1 protein (rep1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.12e-52transcription factor TB1
TrEMBLA0A0D9X8491e-163A0A0D9X849_9ORYZ; Uncharacterized protein
STRINGLPERR08G12880.11e-164(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.26e-25TCP family protein