PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G14510.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 493aa    MW: 52469.9 Da    PI: 9.9768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G14510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-065981123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F r  nL+ H r+H
  LPERR08G14510.1 59 YVCEICNQGFQRDQNLQMHRRRH 81
                     9*********************9 PP
2zf-C2H211.80.00074138159223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C+ C+k +  +s++k H++t+
  LPERR08G14510.1 138 ACSRCSKAYAVHSDYKAHLKTC 159
                      6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.71E-55881No hitNo description
SMARTSM003550.00525981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355100101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-4128158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.71E-5132157No hitNo description
SMARTSM00355130137164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAVPPQDASA AAPEPFRSLQ IATAGAAASK KKRRPAGTPD PDAEVVSLSP RTLLESDRYV  60
CEICNQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPTCLH HDPSHALGDL  120
VGIKKHFRRK HSGHRQWACS RCSKAYAVHS DYKAHLKTCG TRGHTCDCGR VFSRVESFIE  180
HQDACNAGRP RAAEASSSPG HGGGVLGASS SQQQLFGVPA SLSRTASRSS ASPSSDLVVS  240
PMAWPPATGG GAPAMAAPPA FHRFTDPTLS PPTPCGRRGG GGGHSLELQL MPPRGTTCAN  300
GGDGGAPVAA AVGYYAASPR SPAALPSRQP AATDAMRLQL SIGFGGARDD GSNNNSSSSS  360
EVSATAAAAT RLKEEAHEQL RLAMAEKKAA DEARAQAKRQ AELADQEFAA ARRMRHQAQV  420
ELSRAHALRD HAMRQVDATQ LQITCYSCRH KFRARAAAMS SEVASYVSSV VTEGGDNDGL  480
PRSRSRTMAM DIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17133197367Zinc finger protein JACKDAW
5b3h_F2e-17133197367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933KKKRR
22934KKKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G14510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195950.0AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649378.10.0protein SHOOT GRAVITROPISM 5
TrEMBLA0A0D9X8Q50.0A0A0D9X8Q5_9ORYZ; Uncharacterized protein
STRINGLPERR08G14510.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-106C2H2-like zinc finger protein