PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G14680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 227aa    MW: 24624.8 Da    PI: 9.7239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G14680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.6e-09155195954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  LPERR08G14680.1 155 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 195
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12151205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6155195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-6169200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLNSNPEAQF ELMNTMLQLE QLSSFPDHHH GAMAVPCSPP SPPCIGGPQA HHHHFSSAPQ  60
PHHAVSPTNG GYRDKYNYTQ HLPAASAASS YTTTTASRPT ANSTGGEGGG VGPAAMREMI  120
FHIAALQPVN IDPETVRPPK RRNVRISTDP QSVAARMRRE RISERIRILQ RLVPGGTKMD  180
TASMLDEAIH YVKFLKTQVQ SLERAAAANG HRPPPPPAYP GLNGGQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RPPKRR
2155160RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G14680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046931e-133AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149641e-133AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-133CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875737.13e-94transcription factor HEC2
TrEMBLA0A0D9X8S71e-167A0A0D9X8S7_9ORYZ; Uncharacterized protein
STRINGLPERR08G14680.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-38bHLH family protein