PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G14740.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 392aa MW: 41207.4 Da PI: 5.0753

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G14740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.1	2.9e-16	272	325	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ ++ LPERR08G14740.1 272 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQEEMMEMQKR 325 79********************************************99999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.7E-15	267	322	No hit	No description
SMART	SM00338	5.0E-14	268	332	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.231	270	326	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.26E-25	272	324	No hit	No description
Pfam	PF00170	5.8E-14	272	325	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-11	272	326	No hit	No description
PROSITE pattern	PS00036	0	275	290	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDLKDGGGAE RRGAAAAGAA PLSRQGSIYS LTFDELGGGL GKDFGSMNMD ELLRSIWTAE 60 ESQAMASASG GAAPAAGLQR QGSLTLPRTL SVKTVDEVWR DFEREVSPDA ATGGGGGEQQ 120 PGRQPTLGEM TLEEFLVRAG VVRENPAAAA AMVAAAAAAP PVAPRSIQTV NNSSIFFGNF 180 GAANDGAGAG AMGFSPVGIG DPTMGNGLMS GVAGIGGGAI TVTSVDTSVG TMDSAGKGEG 240 DLSSPMAPVP YPFESVIRGR RSGGNVEKVV ERRQRRMIKN RESAARSRAR KQAYTMELEA 300 EVQKLKEQNM ELQKKQEEMM EMQKRLFPDM QKNQGGGSSL RSGQQSIRTE EALLKKNIDR 360 SLISLSQKFG SFCSLLILQT AVEWELELPA AD

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDLKDGGGAE RRGAAAAGAA PLSRQGSIYS LTFDELGGGL GKDFGSMNMD ELLRSIWTAE  60
ESQAMASASG GAAPAAGLQR QGSLTLPRTL SVKTVDEVWR DFEREVSPDA ATGGGGGEQQ  120
PGRQPTLGEM TLEEFLVRAG VVRENPAAAA AMVAAAAAAP PVAPRSIQTV NNSSIFFGNF  180
GAANDGAGAG AMGFSPVGIG DPTMGNGLMS GVAGIGGGAI TVTSVDTSVG TMDSAGKGEG  240
DLSSPMAPVP YPFESVIRGR RSGGNVEKVV ERRQRRMIKN RESAARSRAR KQAYTMELEA  300
EVQKLKEQNM ELQKKQEEMM EMQKRLFPDM QKNQGGGSSL RSGQQSIRTE EALLKKNIDR  360
SLISLSQKFG SFCSLLILQT AVEWELELPA AD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G14740.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT037117	0.0	KT037117.1 Oryza sativa Indica Group cultivar Nonabokra abscisic acid inducible bZIP protein (TRAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650926.1	1e-154	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-155	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A0D9X8T5	0.0	A0A0D9X8T5_9ORYZ; Uncharacterized protein
STRING	LPERR08G14740.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.3	8e-34	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]