PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G15030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 208aa    MW: 22685.8 Da    PI: 10.0418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G15030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-131864354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  LPERR08G15030.1 18 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 64
                     58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7581564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.76E-111865No hitNo description
Gene3DG3DSA:4.10.280.103.8E-141865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-111864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-131973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-112170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.1E-4110178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVMTDGECSA RKAVAPVRSH SEAERKRRQR INAHLATLRT LVPSASRMDK AALLGEVVRH  60
VRELRCRADD ATEGVGVVVP GEGDEVGVEE DDVAVSVGER RWRRRVRAWV CCADRPGLMS  120
DLGRAVRSVS ARPVRAEVAT VGGRTRSVLE LDVAVRDGAT DDNNHDRAVA LSALRAALRT  180
VLLNRDDLLA AADGYKRPRF SPRCSSLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G15030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649548.17e-88transcription factor AIG1
TrEMBLA0A0D9X8X61e-141A0A0D9X8X6_9ORYZ; Uncharacterized protein
STRINGLPERR08G15030.11e-142(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.16e-14bHLH family protein