PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G15570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 229aa    MW: 25125.8 Da    PI: 7.8683
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G15570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.62.4e-12116170357
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      e +r rr+ +NRe+ArrsR RK+ ++ eL + v+ L + N++L +el++    +a
  LPERR08G15570.1 116 EERRRRRMVSNRESARRSRMRKQRQLSELWTQVEHLRGANRRLLDELNRALRGCA 170
                      67899******************************************99766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-11114178IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.7E-9115166No hitNo description
PfamPF001708.6E-10115165IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.427116164IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-10118165No hitNo description
PROSITE patternPS000360121136IPR004827Basic-leucine zipper domain
CDDcd147024.46E-15123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MYHHRHHGGH GEVASLHLLS SPNPPFFATH HHHHHHSLNM ALPPQAYFVP ATPPPFQEAL  60
LAAGAGDDDP MASFELEHIL EEAACRLAGA GAGNGSLSSG SDDHHHGGVV AAVAEEERRR  120
RRMVSNRESA RRSRMRKQRQ LSELWTQVEH LRGANRRLLD ELNRALRGCA DARRENGRLR  180
DEKAELIKKL QLLSPAPEKN ASSSSTSSNG SSCSSEPSKN STTTTTTDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130137RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G15570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043761e-111AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05.
GenBankAP0045571e-111AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149641e-111AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695647.14e-79PREDICTED: basic leucine zipper 63
TrEMBLA0A0D9X9491e-165A0A0D9X949_9ORYZ; Uncharacterized protein
STRINGLPERR08G15570.11e-166(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-10basic leucine-zipper 42