PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G15680.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 452aa    MW: 49017.1 Da    PI: 7.9789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G15680.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.54.2e-17198246254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ L
  LPERR08G15680.2 198 RSKHSATEQRRRSKINDRFQLLRELLPHN----DQKRDKASFLLEVIEYIRFL 246
                      889*************************9....9*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.8E-23195268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-18196271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.914196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-15198251No hitNo description
PfamPF000101.7E-14198246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA TDYKQPAPAP PAQEKRADQP PPPPPSRAQA ADAATEKQLP  60
HHQHAPPAAT AAAAAFTISH AATAVKQEPP FAPWCQPVAA VDPRGYQWSL PFAARGVAVA  120
SRTQQQQQQP PPPERKSGGG FMDAGSRSSG GAGFDDDDGL AARREVSSSL KELTVRVEGK  180
GGSCSGSAGT DQLPNTPRSK HSATEQRRRS KINDRFQLLR ELLPHNDQKR DKASFLLEVI  240
EYIRFLREKV QKYEVSYPEW NQENAKIVPW TNIYFRSSWK NAQNKSQTPA DTSPDPPEHP  300
KNGSSYVFPF TGNCDNNNAV ETAAASGAHH QAETDPRQAQ LVRPSPAENC DMLNNSDLAI  360
DEGTISLSSQ YSQQLLNKLN HALENSGLDL SQASISVNLG KRAMKRSTPA ATSTSKELTD  420
PACESRAMGH QLRLGDGAEE HQASKRHKSD NT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G15680.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0702370.0AK070237.1 Oryza sativa Japonica Group cDNA clone:J023047A01, full insert sequence.
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
GenBankHQ8588650.0HQ858865.1 Oryza sativa Japonica Group isolate UT1674 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650492.10.0transcription factor BIM2 isoform X2
TrEMBLA0A0D9X9620.0A0A0D9X962_9ORYZ; Uncharacterized protein
STRINGLPERR08G15680.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-44BES1-interacting Myc-like protein 2