PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G16990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 656aa    MW: 68695.2 Da    PI: 9.4044
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G16990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-084279433
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........T CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........k 33
                     W t Ed+ll++av+++G+ +W+++a+++          
  LPERR08G16990.1 42 WGTSEDLLLACAVNRHGTASWDAVANEVRsrfpsaaaD 79
                     9**************************99555555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-43896IPR001005SANT/Myb domain
SuperFamilySSF466894.08E-53891IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-44092IPR009057Homeodomain-like
CDDcd001676.12E-44272No hitNo description
PROSITE profilePS500906.3654294IPR017877Myb-like domain
PfamPF002497.1E-84291IPR001005SANT/Myb domain
SMARTSM002974.8E-6304415IPR001487Bromodomain
SuperFamilySSF473701.14E-12308410IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.6E-10314410IPR001487Bromodomain
CDDcd043691.44E-11318410No hitNo description
PfamPF004391.7E-8320399IPR001487Bromodomain
PROSITE profilePS500149.187323396IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MACGTDRAEG MTARSDDPGV SPESSAPAAA QSPSASAAGE IWGTSEDLLL ACAVNRHGTA  60
SWDAVANEVR SRFPSAAADA FTPDSCRLRF RLLHRRFSDT GGDGGGEEEV EPDADAVAGW  120
VEELRKLRVA ELRREVEKYD LSIGSLQSKV KRLKEERERS ISGETKSQAA AAAKEETEEG  180
EDVRKGSPEE EEAGGVEDRV SGHESGRSCK ESNSSDLKRP ENDDPAAAND DDNPAAAREE  240
KAVKEEVAVK EEASGESVAG SKEAAAADAE KESSDVQSSA SPSRRRRKGV AGGEETEEAS  300
PSVSVAIPAA EAEPLVAFLE SIRTSKAGAV FERRLESQEG EGYSGTIRRH VDLETIRSRL  360
TGGATPCYAS ASELYRDLLL LCANALVFFP RASPEHAAAI QIRGLVSNRI ISKIDRPPAV  420
AAGNTAETST KKPKADADIA GSLLEKPPII VCRKRSSIAK AAAAKGEKSE TIDKKEKDGE  480
EKKKPAATAA AASKDKKAAA ATTARGMRTN KSRGQARNQK TAKVSESGEG SKKSDKKAAA  540
AAAAAAAGGV AKKRNAVDFL NRMNQNGSPS TERVSLLETL KLSAAATEQQ NKKSSASSSS  600
GKPGGSGTKK GASAAVAATP PGRRIGRPPK RGAAPPTPPP SKRAKEDKPT RKRGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G16990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650505.10.0uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X1
TrEMBLA0A0D9X9M70.0A0A0D9X9M7_9ORYZ; Uncharacterized protein
STRINGLPERR08G16990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-22DNA-binding bromodomain-containing protein