PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G17530.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 956aa    MW: 104979 Da    PI: 6.6287
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G17530.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.8e-22133234199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++ 
  LPERR08G17530.2 133 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPCQ-ELQARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDA 223
                      99******************************9999986.*************************************************..456 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+++++r+
  LPERR08G17530.2 224 KQQLLLGIRRA 234
                      77789999997 PP
2Auxin_resp93.34.1e-31259332173
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvr 73 
                      aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpv+
  LPERR08G17530.2 259 AAHAAANNSQFTIYYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEETGTRRYMGTITGISDLDPVE 332
                      79**********************************9**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-42122262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-39125248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-18132222No hitNo description
PfamPF023622.5E-20133234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321133235IPR003340B3 DNA binding domain
SMARTSM010194.6E-20133235IPR003340B3 DNA binding domain
PfamPF065074.6E-26259332IPR010525Auxin response factor
PfamPF023091.3E-5836915IPR033389AUX/IAA domain
PROSITE profilePS5174520.335846929IPR000270PB1 domain
SuperFamilySSF542778.83E-5858916No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MAATASSGGG GEEGEGRGTT AKVNQELWYA CAGPLVSLPP QGSLVVYFPQ GHSEQVAASM  60
RRDADAQIPS YPNLPSKLIC ILHSVTMHAD PDTDEVYARM TLQPVSNVTQ CDKEILLASE  120
LALKQTKPQT EFFCKTLTAS DTSTHGGFSV PRRAAERIFP RLDFSLQPPC QELQARDLHD  180
NIWTFRHIYR GQPKRHLLTT GWSLFVSGKR LLAGDSVLFI RDAKQQLLLG IRRANRQPTN  240
LSSSVLSSDS MHIGILAAAA HAAANNSQFT IYYNPRASPS EFVIPFAKYQ KAVYGNQLSL  300
GMRFRMMFET EETGTRRYMG TITGISDLDP VENLSLAQSS AAPSERRTRV SLWEIEPIIA  360
PFFIYPSPMF TAKRPRLPGM AVPGLNLAQW MSMQHNSSLP GTVVQPELLN SLSGKPIQNL  420
AAADLSRQIS FHPQFLQQNS IQFNASLVPQ QNQQTEQLAK VIATQNQLGS SIIPQKVVQD  480
CNSEQRQNVV TQQVQGSQSN ISITQPQLVV QAQLQQPQPQ QPLISEQQKM LLDLQQQMMN  540
SQSAPQQCVQ VNQAISLHNS NTVQYPTQQK VQSHQQVQDF TGNAIPNAKP DVVTSIGPSS  600
LHTAGGLQLL KTDDVPSSST SPSTNSSPVL LQSIPSSSKN QSLATAGKTS QSSVVLGPTI  660
EQDTKPYQSV KQTMIIPKVT EQRPATRQDC INNNTQMDYL DTSSSATSVC LSQADGSLQQ  720
NFPPPSFNQH HLLKDAIPVS DFEVTDPRNN LLFGVSIDGQ LGLPLSADLL ANDIETDKYM  780
DQLPGNGISN YISSKDSQQE LSSSMISHSF GVADMAFNSI DSAVNDTTFL NRNSRSAAGP  840
AHQRMRTYTK VHKRGAVGRS IDINRYSGYD ELKRDVARMF GIEGQLGDQN RVGWKLVYED  900
HEKDVLLVGD DPWEILSPQE EMQMRLVGDF GDSFLPNQAC SSSDGGHPWR ITAFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1542335651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G17530.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0D9X9V50.0A0A0D9X9V5_9ORYZ; Auxin response factor
STRINGLPERR08G17530.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-176auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]