PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G17640.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 214aa    MW: 22237.8 Da    PI: 11.5899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G17640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.5e-132990355
              AP2  3 ykGVrwdkkrgrWvAeIrd.pse...ng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +GVr +  +grW+AeIr+ p+     g      + +r ++g+f +a  Aa a++aa  +++g
  LPERR08G17640.1 29 LRGVRCRL-WGRWAAEIRVpPRRvvvAGaggrpSSsRRLWIGTFPSAVAAALAHDAALYCFYG 90
                     69**9665.**********99989994445688446*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.25628102IPR001471AP2/ERF domain
PRINTSPR003678.1E-62940IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1129101IPR016177DNA-binding domain
PfamPF008474.5E-72989IPR001471AP2/ERF domain
SMARTSM003801.4E-1330108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1830102IPR001471AP2/ERF domain
PRINTSPR003678.1E-66480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVSSRSSAAA VVPIIPPPRQ AAAPRNMGLR GVRCRLWGRW AAEIRVPPRR VVVAGAGGRP  60
SSSRRLWIGT FPSAVAAALA HDAALYCFYG LSPPGRRAFN FPFAPRAAYL DHAHLRLAAA  120
VSGVGGAVTL GAVRAVAGRY ALEVSNMLFA PPPPPPPPVF FAPPPPPATN TMVAGAAAAA  180
IEQQDGGGGN YYRNNEALLS MDLQELAALM GIAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G17640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9X9W91e-146A0A0D9X9W9_9ORYZ; Uncharacterized protein
STRINGLPERR08G17640.11e-147(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555