PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G18520.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 234aa    MW: 24898.3 Da    PI: 9.8129
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G18520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.52e-30171571128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya....tgkrknr.atk.sgyWk.at 86 
                      lppGfrFhPtdeelv +yL++k+ g +l++  vi+++ ++yk++Pwd+p    a+e e yfF+ r  ++      g +++r at+  g Wk a 
  LPERR08G18520.1  17 LPPGFRFHPTDEELVLQYLRRKAFGLPLPA-AVIPDLhNLYKLDPWDIP---GASEGERYFFAMRPAASGgaggGGGKNRRqATAsGGCWKpAG 106
                      79****************************.8899998***********...3456799******999876665344555555553789**666 PP

              NAM  87 gkdkevlsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      g+dk+v+++   +++lvg+kk +vf       ++ a  +    Wvmhey+l
  LPERR08G18520.1 107 GRDKPVVAArcgGSHLVGVKKGMVFVprrqgkTAAAAAAAGGCWVMHEYSL 157
                      78****9998988999**********87744323444455678******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-4013181IPR003441NAC domain
PROSITE profilePS5100541.20217181IPR003441NAC domain
PfamPF023652.8E-2018157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MERAAAPVLV RHGGVMLPPG FRFHPTDEEL VLQYLRRKAF GLPLPAAVIP DLHNLYKLDP  60
WDIPGASEGE RYFFAMRPAA SGGAGGGGGK NRRQATASGG CWKPAGGRDK PVVAARCGGS  120
HLVGVKKGMV FVPRRQGKTA AAAAAAGGCW VMHEYSLAMP LHKKGCLAEA EEWVVCRIFQ  180
RSSRSPRRLD NDDVIRRAPP HDGGAELRSP SPSQSSSVSS CVTSSSDQEE VSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-271718317167NO APICAL MERISTEM PROTEIN
1ut4_B9e-271718317167NO APICAL MERISTEM PROTEIN
1ut7_A9e-271718317167NO APICAL MERISTEM PROTEIN
1ut7_B9e-271718317167NO APICAL MERISTEM PROTEIN
3swm_A9e-271718320170NAC domain-containing protein 19
3swm_B9e-271718320170NAC domain-containing protein 19
3swm_C9e-271718320170NAC domain-containing protein 19
3swm_D9e-271718320170NAC domain-containing protein 19
3swp_A9e-271718320170NAC domain-containing protein 19
3swp_B9e-271718320170NAC domain-containing protein 19
3swp_C9e-271718320170NAC domain-containing protein 19
3swp_D9e-271718320170NAC domain-containing protein 19
4dul_A9e-271718317167NAC domain-containing protein 19
4dul_B9e-271718317167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G18520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615434e-88AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence.
GenBankAK0679064e-88AK067906.1 Oryza sativa Japonica Group cDNA clone:J013126H02, full insert sequence.
GenBankAK0687764e-88AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence.
GenBankAK1047664e-88AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence.
GenBankCT8293314e-88CT829331.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110N11, full insert sequence.
GenBankCT8293324e-88CT829332.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114M05, full insert sequence.
GenBankEU8469974e-88EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659635.11e-110PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A0D9XA741e-169A0A0D9XA74_9ORYZ; Uncharacterized protein
STRINGLPERR08G18520.11e-170(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-38NAC domain containing protein 83