PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G18570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 300aa    MW: 32570.6 Da    PI: 6.5136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G18570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09140187455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  LPERR08G18570.1 140 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALVLDEIINYVQSLQ 187
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.29E-10134191No hitNo description
SuperFamilySSF474599.16E-17134202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.332136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-16136200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6140187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MADFSPHHSL LLKVPASGAA INTNDPNISS FFLYNHSHGS QAPQPANANA AIVEDASLES  60
SVSAVLDTSP LGSPSVDRKR KAAEDGATLS SAHSKDCKDG KSRRGKKPSS KELEEKSTTE  120
DEPPKGYIHV RARRGQATDS HSLAERVRRE RISERMRMLQ ALVPGCDKVT GKALVLDEII  180
NYVQSLQNQV EFLSMRIASM SPVLYGFGMD SDGLHDQKIG SMFQEALAMP APVLNQLSPA  240
PSQAIMDTTT PTISSYSLQS QQGGISFSQD NGSYLMQAVG EPRQQEMLNQ LVFNNMCSFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G18570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8305460.0CT830546.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074O02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659637.10.0PREDICTED: transcription factor bHLH137-like isoform X1
SwissprotQ93W882e-56BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0D9XA800.0A0A0D9XA80_9ORYZ; Uncharacterized protein
STRINGLPERR08G18570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]