PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G19160.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

TCP

Protein Properties

Length: 354aa MW: 37275.5 Da PI: 5.3843

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G19160.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.6	7.7e-37	60	157	6	92
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........... 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ + ++ss+ LPERR08G19160.1 60 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSssgpatsavvd 152 6999********************************************************77777444.2222222222222211222222333 PP TCP 89 .kaak 92 ++++ LPERR08G19160.1 153 gDESP 157 31111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.381	62	116	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.7E-30	62	152	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEAQAQEDKA EAAEEETTTR HHAPPAAVAM SAIPMNSWLV PKPEPVEFFG GMAVVRKPPP 60 RNRDRHTKVE GRGRRIRMPA ACAARIFQLT RELGHKSDGE TIRWLLQQSE PAIIAATGTG 120 TVPAIATTVD GVLRIPTQSS SSSGPATSAV VDGDESPAKR RRKLQPTRAV AGASPLATAA 180 PAAAYYPVIA DPLLQGSGGA AISVQSGLAP ITATGAPQGL VPVFAMPATG TPAVAGSNRM 240 IPQATAVWMV PQPGGAAGAA NQPTQFWAIQ SAPQLVNFAG AQFPTAINVA DFQQQQQQPV 300 SIVQNSNSGG EHHHMQFSGA DSHEQQRRRK EADHPEEDED DDDDEPVSDS SPEE

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEAQAQEDKA EAAEEETTTR HHAPPAAVAM SAIPMNSWLV PKPEPVEFFG GMAVVRKPPP  60
RNRDRHTKVE GRGRRIRMPA ACAARIFQLT RELGHKSDGE TIRWLLQQSE PAIIAATGTG  120
TVPAIATTVD GVLRIPTQSS SSSGPATSAV VDGDESPAKR RRKLQPTRAV AGASPLATAA  180
PAAAYYPVIA DPLLQGSGGA AISVQSGLAP ITATGAPQGL VPVFAMPATG TPAVAGSNRM  240
IPQATAVWMV PQPGGAAGAA NQPTQFWAIQ SAPQLVNFAG AQFPTAINVA DFQQQQQQPV  300
SIVQNSNSGG EHHHMQFSGA DSHEQQRRRK EADHPEEDED DDDDEPVSDS SPEE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G19160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648330.1	0.0	transcription factor PCF2
Swissprot	A2YXQ1	0.0	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	0.0	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A0D9XAF7	0.0	A0A0D9XAF7_9ORYZ; Uncharacterized protein
STRING	LPERR08G19160.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-46	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]