PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G19290.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HSF

Protein Properties

Length: 375aa MW: 40336.1 Da PI: 5.6597

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G19290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.4	1.6e-35	51	142	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+++ed++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+++ll+ LPERR08G19290.1 51 FLTKTYQLVEDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLC 135 9***************************************************************99.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k LPERR08G19290.1 136 EIHRRKV 142 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-38	40	135	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-59	47	140	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.35E-35	48	140	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.8E-20	51	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.5E-32	51	140	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-20	89	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	90	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-20	102	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAAEQAVAAP APGDHHRATT PPARAGEASP SPPPATAAAA AGQQRMVPTP FLTKTYQLVE 60 DPAVDDVISW NDDGSTFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE 120 FANDCFRRGE RRLLCEIHRR KVTPPGATTA VAAAIPMALP VVTTAMRDGS GNSPVMSGEE 180 QVISSSSSPE PPFMLPQAPS GSGSAGGGGG DMGEENERLR RENAQLAREL TQMRKLCNNI 240 LLLMSKYAST TQHLDASSAA GNCSGDGESA EPATPPLPLP AVLDLMPPAA APLSDTDEEM 300 MSAKLFGVSI GRKRMRHDGA GDVAGETKPE PMDGRPHGKE DHESQAWPIY RPRPVYQPIR 360 ACNGYDYDQD GSNSS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAAEQAVAAP APGDHHRATT PPARAGEASP SPPPATAAAA AGQQRMVPTP FLTKTYQLVE  60
DPAVDDVISW NDDGSTFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE  120
FANDCFRRGE RRLLCEIHRR KVTPPGATTA VAAAIPMALP VVTTAMRDGS GNSPVMSGEE  180
QVISSSSSPE PPFMLPQAPS GSGSAGGGGG DMGEENERLR RENAQLAREL TQMRKLCNNI  240
LLLMSKYAST TQHLDASSAA GNCSGDGESA EPATPPLPLP AVLDLMPPAA APLSDTDEEM  300
MSAKLFGVSI GRKRMRHDGA GDVAGETKPE PMDGRPHGKE DHESQAWPIY RPRPVYQPIR  360
ACNGYDYDQD GSNSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	6e-26	51	143	10	112	Heat shock factor protein 1
5hdn_A	6e-26	51	143	10	112	Heat shock factor protein 1
5hdn_B	6e-26	51	143	10	112	Heat shock factor protein 1
5hdn_C	6e-26	51	143	10	112	Heat shock factor protein 1
5hdn_D	6e-26	51	143	10	112	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G19290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659656.1	1e-178	PREDICTED: heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	1e-172	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A0D9XAH4	0.0	A0A0D9XAH4_9ORYZ; Uncharacterized protein
STRING	LPERR08G19290.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-67	heat shock transcription factor B2A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]