PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G19360.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

SRS

Protein Properties

Length: 310aa MW: 31068.2 Da PI: 8.256

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G19360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214.7	2.2e-66	91	232	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +gt+sCqdCGnqakkdC+h RCRtCCksrgfdCathvkstWvpaakrrer++ laa+ +aa ++skr+r++ sa++ t++ss+e+ LPERR08G19360.1 91 AGTISCQDCGNQAKKDCTHLRCRTCCKSRGFDCATHVKSTWVPAAKRRERHNLLAAS------AAAGDSSKRPRDS-----SATTPTTTSSGEQ 173 7899********************************************9998876......3466889999986.....5555555666666 PP DUF702 97 kkel.etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ +++P+evsseavfrcvr++ vd++++e+aYqt+vsi+Gh+fkGiL+d G+++ LPERR08G19360.1 174 QQMMvVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTTVSIAGHLFKGILHDIGPDH 232 555515677**********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-60	93	231	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.2E-27	95	137	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.8E-23	182	230	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAGFPLGGGG GGRHGRDDHH RPPHHAGGGV SPTDAAAFLY PSTAGRGGFQ LWQQQPPPPH 60 PFYAPANIIR FADDPAAAVA GSSSSSRGGG AGTISCQDCG NQAKKDCTHL RCRTCCKSRG 120 FDCATHVKST WVPAAKRRER HNLLAASAAA GDSSKRPRDS SATTPTTTSS GEQQQMMVVG 180 ERFPREVSSE AVFRCVRLGP VDEADAEVAY QTTVSIAGHL FKGILHDIGP DHHSGGGGGG 240 GIGRLAAAGD GGSSPSTAAA PGGGGEGGGV AAGVSSSAVV MDPYPTPGPF AGGGGGGGGA 300 HFFHGGHHPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G19360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004704	2e-65	AP004704.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0544G09.
GenBank	AP006265	2e-65	AP006265.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1112_E06.
GenBank	AP014964	2e-65	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648772.1	1e-115	protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	7e-49	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A0D9XAI5	0.0	A0A0D9XAI5_9ORYZ; Uncharacterized protein
STRING	LPERR08G19360.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-44	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]